Hopping of a processivity factor on DNA revealed by single-molecule assays of diffusion (Q30483015)

16 August 2017

Hopping of a processivity factor on DNA revealed by single-molecule assays of diffusion (English)

1 reference

16 August 2017

4

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author name string

Gloria Komazin-Meredith

1

1 reference

16 August 2017

Rossen Mirchev

2

1 reference

16 August 2017

David E Golan

3

1 reference

16 August 2017

Donald M Coen

5

1 reference

16 August 2017

language of work or name

English

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publication date

25 July 2008

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Proceedings of the National Academy of Sciences of the United States of America

16 August 2017

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16 August 2017

105

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16 August 2017

31

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16 August 2017

10721-10726

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Motion of a DNA sliding clamp observed by single molecule fluorescence spectroscopy

16 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

Structure of a Sliding Clamp on DNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

The positively charged surface of herpes simplex virus UL42 mediates DNA binding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

Dynamic basis for one-dimensional DNA scanning by the mismatch repair complex Msh2-Msh6.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

The late promoter of the human cytomegalovirus viral DNA polymerase processivity factor has an impact on delayed early and late viral gene products but not on viral DNA synthesis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

Effects of substitutions of arginine residues on the basic surface of herpes simplex virus UL42 support a role for DNA binding in processive DNA synthesis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

CELLULAR DNA REPLICASES: Components and Dynamics at the Replication Fork

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

How to get from A to B: strategies for analysing protein motion on DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

Identification of crucial hydrogen-bonding residues for the interaction of herpes simplex virus DNA polymerase subunits via peptide display, mutational, and calorimetric approaches

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

One- and three-dimensional pathways for proteins to reach specific DNA sites

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

The crystal structure of an unusual processivity factor, herpes simplex virus UL42, bound to the C terminus of its cognate polymerase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

Herpes simplex virus processivity factor UL42 imparts increased DNA-binding specificity to the viral DNA polymerase and decreased dissociation from primer-template without reducing the elongation rate.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

Kinetic characterization of linear diffusion of the restriction endonuclease EcoRV on DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

Functional and physical interactions between the Epstein-Barr virus (EBV) proteins BZLF1 and BMRF1: Effects on EBV transcription and lytic replication

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

Functional analysis of the herpes simplex virus UL42 protein.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

Interaction of herpes simplex virus type 1 DNA polymerase and the UL42 accessory protein with a model primer template

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

Detecting the ability of viral, bacterial and eukaryotic replication proteins to track along DNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

Mutations that specifically impair the DNA binding activity of the herpes simplex virus protein UL42

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

Kinetics of protein-nucleic acid interactions: use of salt effects to probe mechanisms of interaction

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

Mechanism of the sliding beta-clamp of DNA polymerase III holoenzyme

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

Nonspecific interaction of lac repressor with DNA: an association reaction driven by counterion release.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

The herpes simplex virus processivity factor, UL42, binds DNA as a monomer

20 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0802676105

The C-terminal third of UL42, a HSV-1 DNA replication protein, is dispensable for viral growth.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0802676105

Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0802676105

Obstacle bypass in protein motion along DNA by two-dimensional rather than one-dimensional sliding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0802676105

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2504831

Linear diffusion on DNA despite high-affinity binding by a DNA polymerase processivity factor

26 November 2018

1 reference

12 December 2020

Two types of replication proteins increase the rate at which T4 DNA polymerase traverses the helical regions in a single-stranded DNA template

1 reference

12 December 2020

Bacteriophage T4 gene 44/62 and gene 45 polymerase accessory proteins stimulate hydrolysis of duplex DNA by T4 DNA polymerase

1 reference

12 December 2020

One-dimensional diffusion of proteins along DNA. Its biological and chemical significance revealed by single-molecule measurements

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0802676105

1 reference

release_hen3uk5eubc6hlrwycit2y5bxe

16 August 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/hen3uk5eubc6hlrwycit2y5bxe

24 November 2022

mapped directly with Wikidata item

1 reference

16 August 2017

PubMed publication ID

18658237

1 reference