Enhanced peptide identification by electron transfer dissociation using an improved Mascot Percolator (Q30524005)

13 October 2017

Enhanced peptide identification by electron transfer dissociation using an improved Mascot Percolator (English)

1 reference

13 October 2017

2

1 reference

13 October 2017

4

1 reference

13 October 2017

James C Wright

1

0 references

Jyoti Choudhary

object named as

Jyoti S Choudhary

series ordinal

6

0 references

Markus Brosch

series ordinal

5

object named as

Markus Brosch

1 reference

13 October 2017

Lu Yu

3

1 reference

13 October 2017

6 April 2012

1 reference

Molecular & Cellular Proteomics

13 October 2017

1 reference

13 October 2017

11

1 reference

13 October 2017

8

1 reference

13 October 2017

478-491

1 reference

On using samples of known protein content to assess the statistical calibration of scores assigned to peptide-spectrum matches in shotgun proteomics

13 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

COMPASS: a suite of pre- and post-search proteomics software tools for OMSSA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Improving software performance for peptide electron transfer dissociation data analysis by implementation of charge state- and sequence-dependent scoring

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Better score function for peptide identification with ETD MS/MS spectra

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Trans-Proteomic Pipeline supports and improves analysis of electron transfer dissociation data sets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

The effect of interfering ions on search algorithm performance for electron-transfer dissociation data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Database search strategies for proteomic data sets generated by electron capture dissociation mass spectrometry.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

A guide to the Proteomics Identifications Database proteomics data repository

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

False discovery rates of protein identifications: a strike against the two-peptide rule

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Electron transfer dissociation in conjunction with collision activation to investigate the Drosophila melanogaster phosphoproteome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Improvements to the percolator algorithm for Peptide identification from shotgun proteomics data sets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

A new probabilistic database search algorithm for ETD spectra

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Accurate and sensitive peptide identification with Mascot Percolator

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Application of electron transfer dissociation (ETD) for the analysis of posttranslational modifications

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Decision tree-driven tandem mass spectrometry for shotgun proteomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

In-depth analysis of tandem mass spectrometry data from disparate instrument types

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

A proteomics grade electron transfer dissociation-enabled hybrid linear ion trap-orbitrap mass spectrometer.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Comprehensive comparison of collision induced dissociation and electron transfer dissociation.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Posterior error probabilities and false discovery rates: two sides of the same coin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Performance characteristics of electron transfer dissociation mass spectrometry

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Analysis of phosphorylation sites on proteins from Saccharomyces cerevisiae by electron transfer dissociation (ETD) mass spectrometry

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

The utility of ETD mass spectrometry in proteomic analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

20 June 2018

The PeptideAtlas project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Open mass spectrometry search algorithm

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Electron-capture dissociation tandem mass spectrometry.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

TANDEM: matching proteins with tandem mass spectra

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Probability-based protein identification by searching sequence databases using mass spectrometry data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3412976

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

20 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.O111.014522

Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.O111.014522

Distributions of ion series in ETD and CID spectra: making a comparison.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.O111.014522

Evaluation of several MS/MS search algorithms for analysis of spectra derived from electron transfer dissociation experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.O111.014522

An FDA bioinformatics tool for microbial genomics research on molecular characterization of bacterial foodborne pathogens using microarrays.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.O111.014522

Sequencing of peptides by tandem mass spectrometry and high-energy collision-induced dissociation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22493177

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

New prospects for proteomics--electron-capture (ECD) and electron-transfer dissociation (ETD) fragmentation techniques and combined fractional diagonal chromatography (COFRADIC)

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22493177

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/MCP.O111.014522

1 reference

13 October 2017

1 reference

13 October 2017

1 reference

PMCID

3412976