Automated tracing of filaments in 3D electron tomography reconstructions using Sculptor and Situs. (Q30524876)

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26 January 2020

title

Automated tracing of filaments in 3D electron tomography reconstructions using Sculptor and Situs (English)

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26 January 2020

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5

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26 January 2020

author name string

Mirabela Rusu

1

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26 January 2020

Zbigniew Starosolski

2

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26 January 2020

Manuel Wahle

3

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26 January 2020

Alexander Rigort

4

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26 January 2020

publication date

13 March 2012

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Journal of Structural Biology

26 January 2020

published in

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volume

178

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26 January 2020

issue

2

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26 January 2020

page(s)

121-128

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Automated tracing of microtubules in electron tomograms of plastic embedded samples of Caenorhabditis elegans embryos

26 January 2020

cites work

1 reference

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Evolutionary bidirectional expansion for the tracing of alpha helices in cryo-electron microscopy reconstructions.

14 July 2018

1 reference

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Automated segmentation of electron tomograms for a quantitative description of actin filament networks

14 July 2018

1 reference

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Using Sculptor and Situs for simultaneous assembly of atomic components into low-resolution shapes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3440181

Using Situs for the integration of multi-resolution structures

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3440181

Evolutionary tabu search strategies for the simultaneous registration of multiple atomic structures in cryo-EM reconstructions

14 July 2018

1 reference

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Evaluation of denoising algorithms for biological electron tomography.

14 July 2018

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Organization of actin networks in intact filopodia

14 July 2018

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The Mechanism of HIV-1 Core Assembly: Insights from Three-Dimensional Reconstructions of Authentic Virions

14 July 2018

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Computational exploration of structural information from cryo-electron tomograms.

14 July 2018

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Cellular motility driven by assembly and disassembly of actin filaments

14 July 2018

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Electron tomography: towards visualizing the molecular organization of the cytoplasm

14 July 2018

1 reference

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Situs: A package for docking crystal structures into low-resolution maps from electron microscopy

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3440181

Three-dimensional reconstruction of single particles from random and nonrandom tilt series

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3440181

Interactive fitting augmented by force-feedback and virtual reality.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3440181

Macromolecular Architecture in Eukaryotic Cells Visualized by Cryoelectron Tomography

26 November 2018

1 reference

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A novel three-dimensional variant of the watershed transform for segmentation of electron density maps

26 November 2018

1 reference

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Multi-resolution contour-based fitting of macromolecular structures

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3440181

Noise Reduction in Electron Tomographic Reconstructions Using Nonlinear Anisotropic Diffusion

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3440181

Denoising of electron tomographic reconstructions using multiscale transformations

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22433493

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structure and function of the Arp2/3 complex

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22433493

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.JSB.2012.03.001

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22433493%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

1 reference

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26 January 2020

PubMed publication ID

22433493

1 reference

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