BLASTGrabber: a bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data (Q30581011)

24 September 2017

BLASTGrabber: a bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data (English)

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24 September 2017

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2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24885091%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Thomas Haverkamp

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24885091%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

Kamran Shalchian-Tabrizi

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4

object named as

Kamran Shalchian-Tabrizi

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24885091%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

author name string

Ralf Stefan Neumann

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24885091%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

language of work or name

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5 May 2014

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24 September 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24885091%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

volume

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24885091%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

page(s)

128

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24885091%20AND%20SRC:MED&resulttype=core&format=json

Collodictyon--an ancient lineage in the tree of eukaryotes

6 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

Genomic analysis of expressed sequence tags in American black bear Ursus americanus

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

Visualizing biological data-now and in the future

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

Visualization of multiple alignments, phylogenies and gene family evolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

BLAST-EXPLORER helps you building datasets for phylogenetic analysis.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

BEAP: The BLAST Extension and Alignment Program- a tool for contig construction and analysis of preliminary genome sequence.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

Batch Blast Extractor: an automated blastx parser application

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

Multigene Phylogeny of Choanozoa and the Origin of Animals

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

MEGAN analysis of metagenomic data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

Approaching the taxonomic affiliation of unidentified sequences in public databases--an example from the mycorrhizal fungi

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

Enhanced protein domain discovery using taxonomy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

Zerg: a very fast BLAST parser library

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

Bioinformatics in the post-sequence era.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

Multi-query sequence BLAST output examination with MuSeqBox

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

Basic local alignment search tool

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

galaxie--CGI scripts for sequence identification through automated phylogenetic analysis.

20 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-128

genBlastG: using BLAST searches to build homologous gene models

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-128

Genome size differentiates co-occurring populations of the planktonic diatom Ditylum brightwellii (Bacillariophyta)

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-128

Genome-wide analysis of the interaction between the endosymbiotic bacterium Wolbachia and its Drosophila host

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-128

BLAST2GENE: a comprehensive conversion of BLAST output into independent genes and gene fragments

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-128

Detecting putative orthologs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-128

The closest BLAST hit is often not the nearest neighbor.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-15-128

Hive plots--rational approach to visualizing networks.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

Improving taxonomy-based protein fold recognition by using global and local features.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4062517

Circoletto: visualizing sequence similarity with Circos

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24885091

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-15-128

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24885091%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/NeumannKHS14

6 June 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24885091%20AND%20SRC:MED&resulttype=core&format=json

6 June 2020

PubMed publication ID

24885091

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24885091%20AND%20SRC:MED&resulttype=core&format=json