xMSanalyzer: automated pipeline for improved feature detection and downstream analysis of large-scale, non-targeted metabolomics data (Q30586234)

15 August 2017

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title

xMSanalyzer: automated pipeline for improved feature detection and downstream analysis of large-scale, non-targeted metabolomics data (English)

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15 August 2017

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Karan Uppal

1

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author name string

Quinlyn A Soltow

2

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15 August 2017

Frederick H Strobel

3

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15 August 2017

W Stephen Pittard

4

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15 August 2017

Kim M Gernert

5

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15 August 2017

Tianwei Yu

6

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15 August 2017

Dean P Jones

7

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15 August 2017

16 January 2013

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15 August 2017

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15 August 2017

14

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15 August 2017

15

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describes a project that uses

15 August 2017

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/3562220

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-14-15

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cites work

High-performance metabolic profiling with dual chromatography-Fourier-transform mass spectrometry (DC-FTMS) for study of the exposome.

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Controlling the False Discovery Rate for Feature Selection in High-resolution NMR Spectra.

20 June 2018

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A practical approach to detect unique metabolic patterns for personalized medicine

20 June 2018

1 reference

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MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562220

Dietary sulfur amino acid effects on fasting plasma cysteine/cystine redox potential in humans.

20 June 2018

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apLCMS--adaptive processing of high-resolution LC/MS data

20 June 2018

1 reference

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Retention time alignment algorithms for LC/MS data must consider non-linear shifts

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562220

Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements

20 June 2018

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A rapid LC-FTMS method for the analysis of cysteine, cystine and cysteine/cystine steady-state redox potential in human plasma

20 June 2018

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OpenMS - an open-source software framework for mass spectrometry

20 June 2018

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DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra

20 June 2018

1 reference

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Mass spectrometry-based metabolomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562220

Metabolomic database annotations via query of elemental compositions: mass accuracy is insufficient even at less than 1 ppm

20 June 2018

1 reference

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A bioinformatician's view of the metabolome

20 June 2018

1 reference

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XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562220

METLIN: a metabolite mass spectral database

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562220

MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562220

Data pre-processing in liquid chromatography-mass spectrometry-based proteomics

20 June 2018

1 reference

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A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3562220

Sensitivity Analysis for Chemical Models

20 June 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-15

A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-15

OpenMS and TOPP: Open Source Software for LC-MS Data Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-15

Metabolite identification via the Madison Metabolomics Consortium Database

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2105-14-15

Metabolomic profiling of human plasma in pancreatic cancer using pressurized capillary electrochromatography

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23323971

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-14-15

1 reference

journals/bmcbi/UppalSSPGYJ13

15 August 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

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1 reference

15 August 2017

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