Dissecting the Characteristics and Dynamics of Human Protein Complexes at Transcriptome Cascade Using RNA-Seq Data (Q30653203)

13 October 2017

Dissecting the Characteristics and Dynamics of Human Protein Complexes at Transcriptome Cascade Using RNA-Seq Data (English)

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13 October 2017

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5

Weida Tong

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13 October 2017

4

Leming Shi

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13 October 2017

6

Tieliu Shi

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13 October 2017

2

Jiwei Chen

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13 October 2017

3

Caiping Shi

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13 October 2017

Geng Chen

1

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PMCID

3688907

13 October 2017

language of work or name

English

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publication date

18 June 2013

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13 October 2017

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13 October 2017

8

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13 October 2017

6

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13 October 2017

e66521

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Creative Commons Attribution 4.0 International

13 October 2017

start time

18 June 2013

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

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Incorporating the human gene annotations in different databases significantly improved transcriptomic and genetic analyses

1 reference

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20 June 2018

1 reference

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Landscape of transcription in human cells

20 June 2018

1 reference

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Community of protein complexes impacts disease association

20 June 2018

1 reference

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RNA-seq analysis of prostate cancer in the Chinese population identifies recurrent gene fusions, cancer-associated long noncoding RNAs and aberrant alternative splicings

20 June 2018

1 reference

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Comparative analysis of different label-free mass spectrometry based protein abundance estimates and their correlation with RNA-Seq gene expression data

20 June 2018

1 reference

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Overview of available methods for diverse RNA-Seq data analyses

20 June 2018

1 reference

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Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer

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1 reference

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Comparative analysis of human protein-coding and noncoding RNAs between brain and 10 mixed cell lines by RNA-Seq.

20 June 2018

1 reference

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Revealing the missing expressed genes beyond the human reference genome by RNA-Seq

20 June 2018

1 reference

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20 June 2018

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20 June 2018

1 reference

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Differential expression in RNA-seq: a matter of depth

20 June 2018

1 reference

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Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development

20 June 2018

1 reference

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Comparative analysis of proteome and transcriptome variation in mouse

20 June 2018

1 reference

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Characterizing the impact of smoking and lung cancer on the airway transcriptome using RNA-Seq

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1 reference

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Computational methods for transcriptome annotation and quantification using RNA-seq

20 June 2018

1 reference

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Global quantification of mammalian gene expression control

20 June 2018

1 reference

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Protein complexes are central in the yeast genetic landscape

20 June 2018

1 reference

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Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads.

20 June 2018

1 reference

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RNA sequencing: advances, challenges and opportunities

20 June 2018

1 reference

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Defining the transcriptome and proteome in three functionally different human cell lines

20 June 2018

1 reference

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Network medicine: a network-based approach to human disease

20 June 2018

1 reference

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Alternative expression analysis by RNA sequencing

20 June 2018

1 reference

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688907

Associating genes and protein complexes with disease via network propagation

20 June 2018

1 reference

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Toward the dynamic interactome: it's about time

20 June 2018

1 reference

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Global signatures of protein and mRNA expression levels

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688907

CORUM: the comprehensive resource of mammalian protein complexes--2009

20 June 2018

1 reference

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Correlation of mRNA and protein in complex biological samples.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688907

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688907

Alternative isoform regulation in human tissue transcriptomes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688907

A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome

20 June 2018

1 reference

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

20 June 2018

1 reference

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A human phenome-interactome network of protein complexes implicated in genetic disorders

20 June 2018

1 reference

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Relating three-dimensional structures to protein networks provides evolutionary insights

20 June 2018

1 reference

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Correlation of mRNA expression and protein abundance affected by multiple sequence features related to translational efficiency in Desulfovibrio vulgaris: a quantitative analysis

20 June 2018

1 reference

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Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688907

The origins and evolution of functional modules: lessons from protein complexes

20 June 2018

1 reference

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Towards a proteome-scale map of the human protein–protein interaction network

20 June 2018

1 reference

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Shelterin: the protein complex that shapes and safeguards human telomeres

20 June 2018

1 reference

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Interactome: gateway into systems biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688907

Mechanistic Studies of Human Molybdopterin Synthase Reaction and Characterization of Mutants Identified in Group B Patients of Molybdenum Cofactor Deficiency

20 June 2018

1 reference

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Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae

20 June 2018

1 reference

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From molecular to modular cell biology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688907

Tissue specificity and the human protein interaction network

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0066521

Modularity and evolutionary constraint on proteins

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0066521

Comprehensively identifying and characterizing the missing gene sequences in human reference genome with integrated analytic approaches

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3688907

10.1371/JOURNAL.PONE.0066521

25 November 2018

Identifiers

DOI

1 reference

13 October 2017

0 references

1 reference

13 October 2017

1 reference

PMCID

3688907