3Omics: a web-based systems biology tool for analysis, integration and visualization of human transcriptomic, proteomic and metabolomic data (Q30656641)

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English	3Omics: a web-based systems biology tool for analysis, integration and visualization of human transcriptomic, proteomic and metabolomic data	scientific article

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scholarly article

1 reference

Europe PubMed Central

17 August 2017

3Omics: a web-based systems biology tool for analysis, integration and visualization of human transcriptomic, proteomic and metabolomic data (English)

1 reference

Europe PubMed Central

17 August 2017

0 references

1 reference

based on heuristic

inferred from title

Yufeng J. Tseng

object named as

Yufeng Jane Tseng

3

0 references

author name string

Tien-Chueh Kuo

1

1 reference

Europe PubMed Central

17 August 2017

Tze-Feng Tian

2

1 reference

Europe PubMed Central

17 August 2017

publication date

23 July 2013

1 reference

Europe PubMed Central

17 August 2017

BMC Systems Biology

1 reference

Europe PubMed Central

17 August 2017

7

1 reference

Europe PubMed Central

17 August 2017

64

1 reference

Europe PubMed Central

17 August 2017

describes a project that uses

object named as

Cytoscape

2 references

Europe PubMed Central

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

https://scigraph.springernature.com/pub.10.1186/1752-0509-7-64

0 references

Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

Integrated metabolome and transcriptome analysis of the NCI60 dataset

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

Entrez Gene: gene-centered information at NCBI

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

MetPA: a web-based metabolomics tool for pathway analysis and visualization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

Visualization of omics data for systems biology

1 reference

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28 July 2018

Interaction techniques for selecting and manipulating subgraphs in network visualizations.

1 reference

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28 July 2018

Visualizing post genomics data-sets on customized pathway maps by ProMeTra-aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example

1 reference

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PubChem: a public information system for analyzing bioactivities of small molecules

1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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1 reference

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28 July 2018

Pathguide: a pathway resource list

1 reference

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28 July 2018

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1 reference

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1 reference

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1 reference

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Systems analysis of transcriptome and proteome in retinoic acid/arsenic trioxide-induced cell differentiation/apoptosis of promyelocytic leukemia

1 reference

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Computational prediction of human metabolic pathways from the complete human genome

1 reference

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28 July 2018

PaVESy: Pathway Visualization and Editing System

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

UniProt: the Universal Protein knowledgebase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

Cytoscape: a software environment for integrated models of biomolecular interaction networks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

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1 reference

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1 reference

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28 July 2018

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3723580

28 July 2018

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1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-64

21 January 2018

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1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-64

21 January 2018

Integrated pathway analysis of rat urine metabolic profiles and kidney transcriptomic profiles to elucidate the systems toxicology of model nephrotoxicants

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-64

21 January 2018

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1 reference

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21 January 2018

VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology.

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-64

21 January 2018

Arena3D: visualization of biological networks in 3D.

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-64

21 January 2018

A gene network for navigating the literature

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-64

21 January 2018

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1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-64

21 January 2018

Correlating the transcriptome, proteome, and metabolome in the environmental adaptation of a hyperthermophile.

1 reference

https://api.crossref.org/works/10.1186%2F1752-0509-7-64

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1 reference

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1 reference

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25 November 2018

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1 reference

https://pubmed.ncbi.nlm.nih.gov/23875761

12 December 2020

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