Combining Hi-C data with phylogenetic correlation to predict the target genes of distal regulatory elements in human genome (Q30664860)

20 August 2017

Combining Hi-C data with phylogenetic correlation to predict the target genes of distal regulatory elements in human genome (English)

1 reference

20 August 2017

1 reference

Yulan Lu

1

1 reference

20 August 2017

Yuanpeng Zhou

series ordinal

2

1 reference

20 August 2017

Weidong Tian

series ordinal

3

1 reference

20 August 2017

language of work or name

English

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publication date

3 September 2013

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20 August 2017

12

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based on heuristic

inferred from page(s)

published in

Nucleic Acids Research

1 reference

20 August 2017

41

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20 August 2017

22

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20 August 2017

10391-10402

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Creative Commons Attribution 3.0 Unported

20 August 2017

start time

10 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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20 June 2018

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Exome sequencing identifies PDE4D mutations as another cause of acrodysostosis

20 June 2018

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20 June 2018

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Altered expression of synapse and glutamate related genes in post-mortem hippocampus of depressed subjects

20 June 2018

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Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

20 June 2018

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A regulatory archipelago controls Hox genes transcription in digits

20 June 2018

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CTCF-mediated functional chromatin interactome in pluripotent cells

20 June 2018

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Focal adhesion kinase regulation of neovascularization

20 June 2018

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20 June 2018

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Enhancer function: new insights into the regulation of tissue-specific gene expression

20 June 2018

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A novel Gli3 enhancer controls the Gli3 spatiotemporal expression pattern through a TALE homeodomain protein binding site

20 June 2018

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Histone H3K27ac separates active from poised enhancers and predicts developmental state

20 June 2018

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20 June 2018

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20 June 2018

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Genomics of long-range regulatory elements

20 June 2018

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DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells

20 June 2018

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Irs1 serine 307 promotes insulin sensitivity in mice

20 June 2018

1 reference

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Control of BMP gene expression by long-range regulatory elements

20 June 2018

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An oestrogen-receptor-α-bound human chromatin interactome

20 June 2018

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20 June 2018

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Comprehensive mapping of long-range interactions reveals folding principles of the human genome

20 June 2018

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Genomic views of distant-acting enhancers

20 June 2018

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KLF4 and PBX1 directly regulate NANOG expression in human embryonic stem cells

20 June 2018

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20 June 2018

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A genome-scale analysis of the cis-regulatory circuitry underlying sonic hedgehog-mediated patterning of the mammalian limb

20 June 2018

1 reference

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Expression profile of CREB knockdown in myeloid leukemia cells

20 June 2018

1 reference

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Model-based analysis of ChIP-Seq (MACS)

20 June 2018

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

20 June 2018

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Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

20 June 2018

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Many hypotheses but no replication for the association between PDE4D and stroke

20 June 2018

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DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays

20 June 2018

1 reference

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Irs1 and Irs2 signaling is essential for hepatic glucose homeostasis and systemic growth

20 June 2018

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Hoxb1 enhancer and control of rhombomere 4 expression: complex interplay between PREP1-PBX1-HOXB1 binding sites

20 June 2018

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A common sex-dependent mutation in a RET enhancer underlies Hirschsprung disease risk.

20 June 2018

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A gene atlas of the mouse and human protein-encoding transcriptomes

20 June 2018

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20 June 2018

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A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly

20 June 2018

1 reference

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SCORE: a computational approach to the identification of cis-regulatory modules and target genes in whole-genome sequence data. Site clustering over random expectation.

20 June 2018

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A phosphatidylinositol 3-kinase phosphodiesterase 3B-cyclic AMP pathway in hypothalamic action of leptin on feeding

20 June 2018

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20 June 2018

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Capturing chromosome conformation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905853

Inhibition of PDE3B augments PDE4 inhibitor-induced apoptosis in a subset of patients with chronic lymphocytic leukemia

20 June 2018

1 reference

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CREB-binding protein and p300 in transcriptional regulation

20 June 2018

1 reference

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A novel transmembrane serine protease (TMPRSS3) overexpressed in pancreatic cancer

20 June 2018

1 reference

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Transactivation and growth suppression by the gut-enriched Krüppel-like factor (Krüppel-like factor 4) are dependent on acidic amino acid residues and protein-protein interaction

20 June 2018

1 reference

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Distant liaisons: long-range enhancer-promoter interactions in Drosophila.

20 June 2018

1 reference

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Germline regulatory element of Oct-4 specific for the totipotent cycle of embryonal cells

20 June 2018

1 reference

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Detecting conserved regulatory elements with the model genome of the Japanese puffer fish, Fugu rubripes

20 June 2018

1 reference

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Upstream operators enhance repression of the lac promoter

20 June 2018

1 reference

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20 June 2018

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Reduction of vitamin D hormone receptor mRNA levels in Alzheimer as compared to Huntington hippocampus: correlation with calbindin-28k mRNA levels

20 June 2018

1 reference

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Mice lacking a Myc enhancer that includes human SNP rs6983267 are resistant to intestinal tumors.

20 June 2018

1 reference

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Replication study of novel risk variants in six genes with type 2 diabetes and related quantitative traits in the Han Chinese lean individuals

25 November 2018

1 reference

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A novel perspective for Alzheimer's disease: vitamin D receptor suppression by amyloid-β and preventing the amyloid-β induced alterations by vitamin D in cortical neurons.

25 November 2018

1 reference

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Genetic association of rs11610206 SNP on chromosome 12q13 with late-onset Alzheimer's disease in a Han Chinese population

25 November 2018

1 reference

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Insulin resistance in human adipocytes occurs downstream of IRS1 after surgical cell isolation but at the level of phosphorylation of IRS1 in type 2 diabetes.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905853

Aniridia-associated translocations, DNase hypersensitivity, sequence comparison and transgenic analysis redefine the functional domain of PAX6.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905853

A duplication/paracentric inversion associated with familial X-linked deafness (DFN3) suggests the presence of a regulatory element more than 400 kb upstream of the POU3F4 gene.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3905853

Association between vitamin D receptor gene polymorphism and Alzheimer's disease

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24003029

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKT785

1 reference

20 August 2017

1 reference

20 August 2017

PubMed publication ID

24003029

1 reference