Mining RNA-seq data for infections and contaminations (Q30665906)

18 August 2017

Mining RNA-seq data for infections and contaminations (English)

1 reference

18 August 2017

0 references

1 reference

Caroline C Friedel

4

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Ralf Zimmer

series ordinal

3

object named as

Ralf Zimmer

1 reference

18 August 2017

Thomas Bonfert

1

1 reference

18 August 2017

Gergely Csaba

series ordinal

2

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18 August 2017

language of work or name

English

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publication date

3 September 2013

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18 August 2017

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18 August 2017

8

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18 August 2017

9

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18 August 2017

e73071

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Creative Commons Attribution 4.0 International

18 August 2017

start time

3 September 2013

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Real-time transcriptional profiling of cellular and viral gene expression during lytic cytomegalovirus infection

14 July 2018

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Metagenomics and metatranscriptomics: windows on CF-associated viral and microbial communities

14 July 2018

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Metagenomic abundance estimation and diagnostic testing on species level.

14 July 2018

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Dual RNA-seq of pathogen and host

14 July 2018

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Metagenomic and metatranscriptomic analysis of microbial community structure and gene expression of activated sludge

14 July 2018

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Generation and analysis of a mouse intestinal metatranscriptome through Illumina based RNA-sequencing

14 July 2018

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A context-based approach to identify the most likely mapping for RNA-seq experiments

14 July 2018

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Metatranscriptomics and pyrosequencing facilitate discovery of potential viral natural enemies of the invasive Caribbean crazy ant, Nylanderia pubens

14 July 2018

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RNASEQR--a streamlined and accurate RNA-seq sequence analysis program

14 July 2018

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ClaMS: A Classifier for Metagenomic Sequences

14 July 2018

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Accurate genome relative abundance estimation based on shotgun metagenomic reads

14 July 2018

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Primary human cervical carcinoma cells require human papillomavirus E6 and E7 expression for ongoing proliferation

14 July 2018

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Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma

14 July 2018

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Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences

14 July 2018

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Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).

14 July 2018

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Integrative analysis of environmental sequences using MEGAN4

14 July 2018

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The sensitivity of massively parallel sequencing for detecting candidate infectious agents associated with human tissue

14 July 2018

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PathSeq: software to identify or discover microbes by deep sequencing of human tissue

14 July 2018

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MapSplice: accurate mapping of RNA-seq reads for splice junction discovery.

14 July 2018

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Mammalian microRNAs predominantly act to decrease target mRNA levels

14 July 2018

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MLTreeMap--accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies

14 July 2018

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Metagenomic sequencing of an in vitro-simulated microbial community

14 July 2018

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Fast and accurate long-read alignment with Burrows-Wheeler transform

14 July 2018

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MARTA: a suite of Java-based tools for assigning taxonomic status to DNA sequences.

14 July 2018

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The NIH Human Microbiome Project

14 July 2018

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TopHat: discovering splice junctions with RNA-Seq

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760913

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760913

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

14 July 2018

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Evolution in the laboratory: The genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1

14 July 2018

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Brd4-independent transcriptional repression function of the papillomavirus e2 proteins

14 July 2018

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Accurate phylogenetic classification of variable-length DNA fragments

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760913

The bacterial species definition in the genomic era.

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760913

Papillomaviruses and cancer: from basic studies to clinical application

14 July 2018

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Human papillomavirus is a necessary cause of invasive cervical cancer worldwide

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760913

Nucleotide sequences of cDNAs for human papillomavirus type 18 transcripts in HeLa cells

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3760913

Divergence measures based on the Shannon entropy

14 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0073071

SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0073071

Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0073071

10.1371/JOURNAL.PONE.0073071

21 January 2018

Identifiers

DOI

1 reference

18 August 2017

0 references

1 reference

18 August 2017

PubMed publication ID

24019895

1 reference