Evaluating topological conflict in centipede phylogeny using transcriptomic data sets (Q30786867)

26 June 2017

title

Evaluating topological conflict in centipede phylogeny using transcriptomic data sets (English)

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26 June 2017

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8

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26 June 2017

Silvia Libro

4

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Varpu Vahtera

Varpu Vahtera

3

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Alicia R Pérez-Porro

Alicia R Pérez-Porro

7

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Gonzalo Giribet

Gonzalo Giribet

9

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Rosa Fernández

1

Rosa Fernández

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26 June 2017

6

Prashant P Sharma

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26 June 2017

Christopher E Laumer

2

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26 June 2017

Stefan Kaluziak

5

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26 June 2017

publication date

26 March 2014

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Molecular Biology and Evolution

26 June 2017

published in

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26 June 2017

volume

31

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26 June 2017

issue

6

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26 June 2017

page(s)

1500-1513

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Inferring hierarchical orthologous groups from orthologous gene pairs

26 June 2017

cites work

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

OMA 2011: orthology inference among 1000 complete genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Conserved genes, sampling error, and phylogenomic inference.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

On the phylogenetic position of Myzostomida: can 77 genes get it wrong?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Decisive data sets in phylogenomics: lessons from studies on the phylogenetic relationships of primarily wingless insects

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Broad phylogenomic sampling improves resolution of the animal tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

MUSCLE: multiple sequence alignment with high accuracy and high throughput

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Evolutionary biology of centipedes (Myriapoda: Chilopoda).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

A New Zealand species of the trans-Tasman centipede order Craterostigmomorpha (Arthropoda�:�Chilopoda) corroborated by molecular evidence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Is a new and general theory of molecular systematics emerging?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Modeling compositional heterogeneity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

CD-HIT: accelerated for clustering the next-generation sequencing data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Internal phylogeny of the Chilopoda (Myriapoda, Arthropoda) using complete 18S rDNA and partial 28S rDNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Conflict between datasets and phylogeny of centipedes: an analysis based on seven genes and morphology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Full-length transcriptome assembly from RNA-Seq data without a reference genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

The genome of Tetranychus urticae reveals herbivorous pest adaptations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

SuperQ: computing supernetworks from quartets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Exploiting gene families for phylogenomic analysis of myzostomid transcriptome data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Assessing the root of bilaterian animals with scalable phylogenomic methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Application of phylogenetic networks in evolutionary studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Phylogenomics: the beginning of incongruence?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Phylogenomics reveals deep molluscan relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Inconsistency of phylogenetic estimates from concatenated data under coalescence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Improvement of molecular phylogenetic inference and the phylogeny of Bilateria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

PhyloBayes MPI: phylogenetic reconstruction with infinite mixtures of profiles in a parallel environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Modeling protein evolution with several amino acid replacement matrices depending on site rates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Rates of phenotypic and genomic evolution during the Cambrian explosion

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Let them fall where they may: congruence analysis in massive phylogenetically messy data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Further use of nearly complete 28S and 18S rRNA genes to classify Ecdysozoa: 37 more arthropods and a kinorhynch

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

A phylogenomic approach to resolve the arthropod tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Including secondary structure, fossils and molecular dating in the centipede tree of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Deep metazoan phylogeny: when different genes tell different stories.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Resolving difficult phylogenetic questions: why more sequences are not enough

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Large-scale sequencing and the new animal phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Improved phylogenomic taxon sampling noticeably affects nonbilaterian relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

FastTree 2--approximately maximum-likelihood trees for large alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Phylogenetic analysis of Myriapoda using three nuclear protein-coding genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Dating the arthropod tree based on large-scale transcriptome data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Molecular timetrees reveal a Cambrian colonization of land and a new scenario for ecdysozoan evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Impact of missing data on phylogenies inferred from empirical phylogenomic data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Evaluating ortholog prediction algorithms in a yeast model clade

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Inferring ancient divergences requires genes with strong phylogenetic signals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Novel information theory-based measures for quantifying incongruence among phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

The geological record and phylogeny of the Myriapoda

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Resolving the evolutionary relationships of molluscs with phylogenomic tools

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Phyutility: a phyloinformatics tool for trees, alignments and molecular data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Phylogenomic analyses unravel annelid evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

DendroPy: a Python library for phylogenetic computing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Pancrustacean phylogeny in the light of new phylogenomic data: support for Remipedia as the possible sister group of Hexapoda

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Morphology and Taxonomy of Paleozoic Millipedes (Diplopoda: Chilognatha: Archipolypoda) from Scotland

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Accounting for alignment uncertainty in phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

Adding mitochondrial sequence data (16S rRNA and cytochrome c oxidase subunit I) to the phylogeny of centipedes (Myriapoda: Chilopoda): an analysis of morphology and four molecular loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

The preoral chamber in geophilomorph centipedes: comparative morphology, phylogeny, and the evolution of centipede feeding structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSU108

21 January 2018

Identifiers

DOI

10.1093/MOLBEV/MSU108

1 reference

26 June 2017

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