Pathway analysis with next-generation sequencing data (Q30834583)

13 August 2017

Pathway analysis with next-generation sequencing data (English)

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13 August 2017

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Eric Boerwinkle

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author name string

Jinying Zhao

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1

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13 August 2017

Yun Zhu

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2

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13 August 2017

Momiao Xiong

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4

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13 August 2017

2 July 2014

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European Journal of Human Genetics

13 August 2017

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13 August 2017

23

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13 August 2017

4

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13 August 2017

507-515

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describes a project that uses

13 August 2017

massive parallel sequencing

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Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants

inferred from title

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

INRICH: interval-based enrichment analysis for genome-wide association studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

VEGF gene therapy: therapeutic angiogenesis in the clinic and beyond

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Evaluating methods for combining rare variant data in pathway-based tests of genetic association

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Application of collapsing methods for continuous traits to the Genetic Analysis Workshop 17 exome sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Evaluating methods for the analysis of rare variants in sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Does pathway analysis make it easier for common variants to tag rare ones?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Pathway analysis following association study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Enrichment analysis of genetic association in genes and pathways by aggregating signals from both rare and common variants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Retention of atherogenic lipoproteins in the artery wall and its role in atherogenesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Rare-variant association testing for sequencing data with the sequence kernel association test

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Anti-inflammatory therapeutic approaches to reduce acute atherosclerotic complications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Analysing biological pathways in genome-wide association studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

To identify associations with rare variants, just WHaIT: Weighted haplotype and imputation-based tests

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Therapeutic angiogenesis for cardiovascular disease: biological context, challenges, prospects

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Common inherited variation in mitochondrial genes is not enriched for associations with type 2 diabetes or related glycemic traits

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Testing SNPs and sets of SNPs for importance in association studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

GSA-SNP: a general approach for gene set analysis of polymorphisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Pooled association tests for rare variants in exon-resequencing studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Genome-wide gene and pathway analysis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

i-GSEA4GWAS: a web server for identification of pathways/gene sets associated with traits by applying an improved gene set enrichment analysis to genome-wide association study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Genetic heterogeneity in human disease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

A new permutation strategy of pathway-based approach for genome-wide association study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Gene, region and pathway level analyses in whole-genome studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Gene ontology analysis of GWA study data sets provides insights into the biology of bipolar disorder

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

GLOSSI: a method to assess the association of genetic loci-sets with complex diseases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Pathway analysis by adaptive combination of P-values

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

A groupwise association test for rare mutations using a weighted sum statistic

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

A general modular framework for gene set enrichment analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Cytokines in atherosclerosis: pathogenic and regulatory pathways

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

VEGF gene delivery for treatment of ischemic cardiovascular disease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

KEGG: Kyoto Encyclopedia of Genes and Genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4666565

On the utility of gene set methods in genomewide association studies of quantitative traits

21 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FEJHG.2014.121

VEGF pathway inhibition by anticancer agent sunitinib and susceptibility to atherosclerosis plaque disruption.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEJHG.2014.121

Genetic variants in TGFβ-1 and PAI-1 as possible risk factors for cardiovascular disease after radiotherapy for breast cancer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEJHG.2014.121

The SNP ratio test: pathway analysis of genome-wide association datasets

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FEJHG.2014.121

Prioritizing risk pathways: a novel association approach to searching for disease pathways fusing SNPs and pathways

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24986826

12 December 2020

inferred from PubMed ID database lookup

Effect of arterial proteoglycans and glycosaminoglycans on low density lipoprotein oxidation and its uptake by human macrophages and arterial smooth muscle cells

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24986826

12 December 2020

inferred from PubMed ID database lookup

TGFβ/activin signaling pathway activation in intimal hyperplasia and atherosclerosis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24986826

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1038/EJHG.2014.121

1 reference

13 August 2017

1 reference

13 August 2017

PubMed publication ID

24986826

1 reference