Comparison of gene expression microarray data with count-based RNA measurements informs microarray interpretation (Q30840618)

8 November 2017

Comparison of gene expression microarray data with count-based RNA measurements informs microarray interpretation (English)

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8 November 2017

4

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1 June 2020

James Lee

6

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1 June 2020

K G Smith

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1 June 2020

2

Paul A Lyons

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1 June 2020

author name string

Arianne C Richard

1

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1 June 2020

James E Peters

3

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1 June 2020

Shaun M Flint

5

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1 June 2020

Eoin F McKinney

7

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1 June 2020

Richard M Siegel

8

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1 June 2020

language of work or name

English

0 references

publication date

4 August 2014

1 reference

8 November 2017

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25091430%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

volume

15

1 reference

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1 June 2020

page(s)

649

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Systematic evaluation of medium-throughput mRNA abundance platforms

1 June 2020

cites work

1 reference

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Batch effect removal methods for microarray gene expression data integration: a survey

21 June 2018

1 reference

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Gene expression profiling of CD8+ T cells predicts prognosis in patients with Crohn disease and ulcerative colitis

21 June 2018

1 reference

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mRNA transcript quantification in archival samples using multiplexed, color-coded probes

21 June 2018

1 reference

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Removing batch effects in analysis of expression microarray data: an evaluation of six batch adjustment methods

21 June 2018

1 reference

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The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes

21 June 2018

1 reference

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Tackling the widespread and critical impact of batch effects in high-throughput data

21 June 2018

1 reference

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A framework for oligonucleotide microarray preprocessing.

21 June 2018

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A comparison of batch effect removal methods for enhancement of prediction performance using MAQC-II microarray gene expression data

21 June 2018

1 reference

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Independent filtering increases detection power for high-throughput experiments

21 June 2018

1 reference

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A CD8+ T cell transcription signature predicts prognosis in autoimmune disease

21 June 2018

1 reference

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Probe set filtering increases correlation between Affymetrix GeneChip and qRT-PCR expression measurements

21 June 2018

1 reference

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Filtering for increased power for microarray data analysis

21 June 2018

1 reference

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arrayQualityMetrics--a bioconductor package for quality assessment of microarray data

21 June 2018

1 reference

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Consolidated strategy for the analysis of microarray spike-in data

21 June 2018

1 reference

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Direct multiplexed measurement of gene expression with color-coded probe pairs

21 June 2018

1 reference

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A gene expression bar code for microarray data

21 June 2018

1 reference

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Microarray analysis of human leucocyte subsets: the advantages of positive selection and rapid purification

21 June 2018

1 reference

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Using RNA sample titrations to assess microarray platform performance and normalization techniques

21 June 2018

1 reference

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Probe set algorithms: is there a rational best bet?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4143561

Adjusting batch effects in microarray expression data using empirical Bayes methods

21 June 2018

1 reference

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How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results

21 June 2018

1 reference

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Microarray data analysis: from disarray to consolidation and consensus

21 June 2018

1 reference

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Real-time PCR for mRNA quantitation

21 June 2018

1 reference

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Independence and reproducibility across microarray platforms

21 June 2018

1 reference

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Pitfalls of quantitative real-time reverse-transcription polymerase chain reaction

21 June 2018

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Summaries of Affymetrix GeneChip probe level data

21 June 2018

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A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

21 June 2018

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Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes

21 June 2018

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Profound effect of normalization on detection of differentially expressed genes in oligonucleotide microarray data analysis

21 June 2018

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Accuracy and calibration of commercial oligonucleotide and custom cDNA microarrays

21 June 2018

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Microarray bioinformatics.

21 June 2018

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Evaluation of DNA microarray results with quantitative gene expression platforms

25 November 2018

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Comparison of Affymetrix GeneChip expression measures.

25 November 2018

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A benchmark for Affymetrix GeneChip expression measures

25 November 2018

1 reference

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A multiplex branched DNA assay for parallel quantitative gene expression profiling

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25091430

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Methods for evaluating gene expression from Affymetrix microarray datasets

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25091430

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-15-649

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25091430%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

1 June 2020

0 references

1 reference

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1 June 2020

PubMed publication ID

25091430

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25091430%20AND%20SRC:MED&resulttype=core&format=json