ABC inference of multi-population divergence with admixture from unphased population genomic data (Q30841983)

12 October 2017

ABC inference of multi-population divergence with admixture from unphased population genomic data (English)

1 reference

12 October 2017

Lynsey Bunnefeld

2

0 references

Graham N. Stone

object named as

Graham N Stone

series ordinal

4

0 references

Jack Hearn

series ordinal

3

object named as

Jack Hearn

1 reference

12 October 2017

5

Michael J Hickerson

1 reference

12 October 2017

John D Robinson

1

1 reference

12 October 2017

6 September 2014

1 reference

12 October 2017

1 reference

12 October 2017

23

1 reference

12 October 2017

18

1 reference

12 October 2017

4458-4471

1 reference

Gene-flow in a mosaic hybrid zone: is local introgression adaptive?

12 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Neandertal admixture in Eurasia confirmed by maximum-likelihood analysis of three genomes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Comparative species divergence across eight triplets of spiny lizards (Sceloporus) using genomic sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Demographic divergence history of pied flycatcher and collared flycatcher inferred from whole-genome re-sequencing data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Robust demographic inference from genomic and SNP data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Great ape genetic diversity and population history

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Understanding the origin of species with genome-scale data: modelling gene flow

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Inferring phylogeny and introgression using RADseq data: an example from flowering plants (Pedicularis: Orobanchaceae)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Approximate Bayesian estimation of extinction rate in the Finnish Daphnia magna metapopulation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Identifying loci under selection against gene flow in isolation-with-migration models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Simulating gene trees under the multispecies coalescent and time-dependent migration

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Approximate Bayesian computation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Inference of population splits and mixtures from genome-wide allele frequency data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Testing hypotheses for genealogical discordance in a rainforest lizard

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

A novel approach for choosing summary statistics in approximate Bayesian computation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Demographic inference using spectral methods on SNP data, with an analysis of the human out-of-Africa expansion

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Understanding the recent colonization history of a plant pathogenic fungus using population genetic tools and Approximate Bayesian Computation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Inferring the history of population size change from genome-wide SNP data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Estimating demographic parameters from large-scale population genomic data using Approximate Bayesian Computation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Does speciation between Arabidopsis halleri and Arabidopsis lyrata coincide with major changes in a molecular target of adaptation?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

On the nonidentifiability of migration time estimates in isolation with migration models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Bayesian inference of ancient human demography from individual genome sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

A general method for calculating likelihoods under the coalescent process

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Lack of confidence in approximate Bayesian computation model choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Non-equilibrium allele frequency spectra via spectral methods

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Testing for ancient admixture between closely related populations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

MTML-msBayes: approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Demographic history of Oceania inferred from genome-wide data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

A likelihood ratio test of speciation with gene flow using genomic sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Approximate Bayesian Computation (ABC) in practice.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Likelihood-free inference of population structure and local adaptation in a Bayesian hierarchical model

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Population genetic inference from genomic sequence variation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Estimating divergence parameters with small samples from a large number of loci

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Inferring the joint demographic history of multiple populations from multidimensional SNP frequency data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Speciation in Passerina buntings: introgression patterns of sex-linked loci identify a candidate gene region for reproductive isolation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Historical divergence and gene flow in the genus Zea

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Inference of historical changes in migration rate from the lengths of migrant tracts

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Rapid SNP discovery and genetic mapping using sequenced RAD markers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Patterns of polymorphism and demographic history in natural populations of Arabidopsis lyrata

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Demographic history of european populations of Arabidopsis thaliana

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Test for simultaneous divergence using approximate Bayesian computation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Comparative phylogeographic summary statistics for testing simultaneous vicariance

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Approximate Bayesian computation in population genetics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

The population biology of oak gall wasps (Hymenoptera: Cynipidae).

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Distinguishing migration from isolation: a Markov chain Monte Carlo approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Hybrid zones and the genetic architecture of a barrier to gene flow between two sunflower species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Inferring coalescence times from DNA sequence data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Estimating ancestral population parameters.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

Non-linear regression models for Approximate Bayesian Computation

21 June 2018

1 reference

abc: an R package for approximate Bayesian computation (ABC)

21 January 2018

1 reference

Accuracy of coalescent likelihood estimates: do we need more sites, more sequences, or more loci?

21 January 2018

1 reference

Integrative testing of how environments from the past to the present shape genetic structure across landscapes

21 January 2018

1 reference

Likelihood-based inference of population history from low-coverage de novo genome assemblies

21 January 2018

1 reference

Colonization and/or mitochondrial selective sweeps across the North Atlantic intertidal assemblage revealed by multi-taxa approximate Bayesian computation

21 January 2018

1 reference

Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation lines

21 January 2018

1 reference

A likelihood-based comparison of population histories in a parasitoid guild

21 January 2018

1 reference

Approximate Bayesian computational methods

21 January 2018

1 reference

msABC: a modification of Hudson's ms to facilitate multi-locus ABC analysis

21 January 2018

1 reference

Understanding patterns of genetic diversity in the oak gallwasp Biorhiza pallida: demographic history or a Wolbachia selective sweep?

21 January 2018

1 reference

Out of Anatolia: longitudinal gradients in genetic diversity support an eastern origin for a circum-Mediterranean oak gallwasp Andricus quercustozae

21 January 2018

1 reference

Crossing the species barrier: genomic hotspots of introgression between two highly divergent Ciona intestinalis species.

21 January 2018

1 reference

The phylogeographical clade trade: tracing the impact of human-mediated dispersal on the colonization of northern Europe by the oak gallwasp Andricus kollari.

21 January 2018

1 reference

Extreme host plant conservatism during at least 20 million years of host plant pursuit by oak gallwasps

21 January 2018

1 reference

Interpreting the estimated timing of migration events between hybridizing species

21 January 2018

1 reference

Expected coalescence times and segregating sites in a model of glacial cycles.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4285295

25 November 2018

Identifiers

DOI

10.1111/MEC.12881

1 reference

12 October 2017

1 reference

PMC publication ID

4285295

12 October 2017

PubMed publication ID

25113024

1 reference

PMC publication ID

4285295