B-ZIP proteins encoded by the Drosophila genome: evaluation of potential dimerization partners (Q30842837)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12176927%20AND%20SRC:MED&resulttype=core&format=json

12 November 2019

title

B-ZIP proteins encoded by the Drosophila genome: evaluation of potential dimerization partners (English)

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12 November 2019

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2

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12 November 2019

author name string

Jan Fassler

1

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12 November 2019

Asha Acharya

3

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12 November 2019

Jonathan R Moll

4

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12 November 2019

Maria Bonovich

5

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12 November 2019

Charles Vinson

6

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12 November 2019

publication date

1 August 2002

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12 November 2019

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12 November 2019

volume

12

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12 November 2019

issue

8

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12 November 2019

page(s)

1190-1200

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Classification of human B-ZIP proteins based on dimerization properties

12 November 2019

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Attractive interhelical electrostatic interactions in the proline- and acidic-rich region (PAR) leucine zipper subfamily preclude heterodimerization with other basic leucine zipper subfamilies

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Structure of the DNA-binding domains from NFAT, Fos and Jun bound specifically to DNA

21 June 2018

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Yap, a novel family of eight bZIP proteins in Saccharomyces cerevisiae with distinct biological functions

21 June 2018

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A general method to design dominant negatives to B-HLHZip proteins that abolish DNA binding

21 June 2018

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21 June 2018

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SKN-1 domain folding and basic region monomer stabilization upon DNA binding

21 June 2018

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The vrille gene of Drosophila is a maternal enhancer of decapentaplegic and encodes a new member of the bZIP family of transcription factors

21 June 2018

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

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A dominant negative to activation protein-1 (AP1) that abolishes DNA binding and inhibits oncogenesis.

21 June 2018

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Buried asparagines determine the dimerization specificities of leucine zipper mutants

21 June 2018

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21 June 2018

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Stress-induced binding of the transcriptional factor CHOP to a novel DNA control element

21 June 2018

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Isolation of Drosophila CREB-B: a novel CRE-binding protein.

21 June 2018

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Fos and Jun repress transcription activation by NF-IL6 through association at the basic zipper region

21 June 2018

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A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants

21 June 2018

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A thermodynamic scale for leucine zipper stability and dimerization specificity: e and g interhelical interactions

21 June 2018

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

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Crystal structure of the heterodimeric bZIP transcription factor c-Fos-c-Jun bound to DNA

21 June 2018

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Transcription factors 1: bZIP proteins.

21 June 2018

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Extending dimerization interfaces: the bZIP basic region can form a coiled coil.

21 June 2018

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The leucine zipper: a hypothetical structure common to a new class of DNA binding proteins

21 June 2018

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Novel Jun- and Fos-related proteins in Drosophila are functionally homologous to enhancer factor AP-1

21 June 2018

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Scissors-grip model for DNA recognition by a family of leucine zipper proteins

21 June 2018

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The DNA binding domain of the rat liver nuclear protein C/EBP is bipartite

21 June 2018

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21 June 2018

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Alpha-helical coiled coils and bundles: how to design an alpha-helical protein

21 June 2018

1 reference

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The Drosophila Fos-related AP-1 protein is a developmentally regulated transcription factor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186634

X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186634

Segmentally restricted, cephalic expression of a leucine zipper gene during Drosophila embryogenesis.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186634

Cross-family dimerization of transcription factors Fos/Jun and ATF/CREB alters DNA binding specificity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186634

Drosophila homolog of the mammalian jun oncogene is expressed during embryonic development and activates transcription in mammalian cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186634

Structure of the leucine zipper

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186634

The giant gene of Drosophila encodes a b-ZIP DNA-binding protein that regulates the expression of other segmentation gap genes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186634

CHOP, a novel developmentally regulated nuclear protein that dimerizes with transcription factors C/EBP and LAP and functions as a dominant-negative inhibitor of gene transcription

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186634

skn-1, a maternally expressed gene required to specify the fate of ventral blastomeres in the early C. elegans embryo

21 June 2018

1 reference

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Hlf, a novel hepatic bZIP protein, shows altered DNA-binding properties following fusion to E2A in t(17;19) acute lymphoblastic leukemia

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186634

A cyclic AMP-responsive element-binding transcriptional activator in Drosophila melanogaster, dCREB-A, is a member of the leucine zipper family

21 June 2018

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The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted alpha helices: crystal structure of the protein-DNA complex

21 June 2018

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Drosophila C/EBP: a tissue-specific DNA-binding protein required for embryonic development

21 June 2018

1 reference

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Fusion of the leucine zipper gene HLF to the E2A gene in human acute B-lineage leukemia

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186634

Inter-helical interactions in the leucine zipper coiled coil dimer: pH and salt dependence of coupling energy between charged amino acids.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186634

A bZIP protein, sisterless-a, collaborates with bHLH transcription factors early in Drosophila development to determine sex.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186634

Leucine is the most stabilizing aliphatic amino acid in the d position of a dimeric leucine zipper coiled coil

25 November 2018

1 reference

12 December 2020

Expressing the human genome

1 reference

12 December 2020

Tropomyosin coiled-coil interactions: Evidence for an unstaggered structure

1 reference

12 December 2020

A single site mutation in a truncated Fos protein allows it to interact with the TRE in vitro

1 reference

12 December 2020

Mechanism of specificity in the Fos-Jun oncoprotein heterodimer

1 reference

12 December 2020

Dimerization specificity of the leucine zipper-containing bZIP motif on DNA binding: prediction and rational design

1 reference

12 December 2020

The net energetic contribution of interhelical electrostatic attractions to coiled-coil stability

1 reference

12 December 2020

Identifiers

DOI

10.1101/GR.67902

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12176927%20AND%20SRC:MED&resulttype=core&format=json

release_gpicml7kgrhbvornjhezxkp25e

12 November 2019

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/gpicml7kgrhbvornjhezxkp25e

24 November 2022

mapped directly with Wikidata item

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12 November 2019

1 reference