Gene expression and isoform variation analysis using Affymetrix Exon Arrays (Q30850747)

17 August 2017

Gene expression and isoform variation analysis using Affymetrix Exon Arrays (English)

1 reference

17 August 2017

Amandine Bemmo

1

1 reference

17 August 2017

David Benovoy

2

1 reference

17 August 2017

Tony Kwan

3

1 reference

17 August 2017

Daniel J Gaffney

4

1 reference

17 August 2017

Roderick V Jensen

5

1 reference

17 August 2017

Jacek Majewski

6

1 reference

17 August 2017

language of work or name

English

0 references

publication date

7 November 2008

1 reference

17 August 2017

1 reference

17 August 2017

9

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17 August 2017

1

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28 June 2019

page(s)

529

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-9-529

17 August 2017

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cites work

Effect of polymorphisms within probe-target sequences on olignonucleotide microarray experiments

1 reference

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FIRMA: a method for detection of alternative splicing from exon array data

21 June 2018

1 reference

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MADS: a new and improved method for analysis of differential alternative splicing by exon-tiling microarrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Comprehensive analysis of affymetrix exon arrays using BioConductor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Alternative splicing in colon, bladder, and prostate cancer identified by exon array analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

The UCSC Genome Browser Database: 2008 update

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Diverse roles of hnRNP L in mammalian mRNA processing: a combined microarray and RNAi analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Insights into the connection between cancer and alternative splicing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Alternative splicing events identified in human embryonic stem cells and neural progenitors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Exon expression profiling reveals stimulus-mediated exon use in neural cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Heritability of alternative splicing in the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Exon arrays provide accurate assessments of gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Discovery of tissue-specific exons using comprehensive human exon microarrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

High correspondence between Affymetrix exon and standard expression arrays.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

HOLLYWOOD: a comparative relational database of alternative splicing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Analysis of alternative splicing with microarrays: successes and challenges

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Nucleotide Frequency Variation Across Human Genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Distribution and characterization of regulatory elements in the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Controlling the false discovery rate in behavior genetics research

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Genome-wide analysis of transcript isoform variation in humans

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

A comparison of Affymetrix gene expression arrays

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Evaluation of DNA microarray results with quantitative gene expression platforms

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Genome-wide analysis of mouse transcripts using exon microarrays and factor graphs.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585104

Evidence that all messenger RNA molecules (except histone messenger RNA) contain poly(A) sequences and that the poly(A) has a nuclear function

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18990248

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Brain non-adenylated mRNAs

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18990248

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Assessing the conservation of mammalian gene expression using high-density exon arrays

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18990248

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-9-529

1 reference

Dimensions Publication ID

17 August 2017

0 references

1 reference

17 August 2017

1 reference