Comparison of data acquisition strategies on quadrupole ion trap instrumentation for shotgun proteomics (Q30855442)

18 September 2017

Comparison of data acquisition strategies on quadrupole ion trap instrumentation for shotgun proteomics (English)

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18 September 2017

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3

Michael J MacCoss

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18 September 2017

4

David R Goodlett

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18 September 2017

Jesse D Canterbury

1

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18 September 2017

Gennifer E Merrihew

series ordinal

2

1 reference

18 September 2017

Scott A Shaffer

series ordinal

5

1 reference

18 September 2017

27 September 2014

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Journal of the American Society for Mass Spectrometry

18 September 2017

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18 September 2017

25

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18 September 2017

12

1 reference

18 September 2017

2048-2059

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Multiplexed and data-independent tandem mass spectrometry for global proteome profiling.

18 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Data-controlled automation of liquid chromatography/tandem mass spectrometry analysis of peptide mixtures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Multiplexed MS/MS for improved data-independent acquisition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Improving qualitative and quantitative performance for MS(E)-based label-free proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

A mass spectrometry proteomics data management platform

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Accurate peptide fragment mass analysis: multiplexed peptide identification and quantification

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Faster, quantitative, and accurate precursor acquisition independent from ion count

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Advances in Whole Genome Sequencing Technology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Proteomics on an Orbitrap benchtop mass spectrometer using all-ion fragmentation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Dual-pressure linear ion trap mass spectrometer improving the analysis of complex protein mixtures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

The ion funnel: theory, implementations, and applications

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Proteomic parsimony through bipartite graph analysis improves accuracy and transparency

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Automatic gain control in mass spectrometry using a jet disrupter electrode in an electrodynamic ion funnel

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Development of high-sensitivity ion trap ion mobility spectrometry time-of-flight techniques: a high-throughput nano-LC-IMS-TOF separation of peptides arising from a Drosophila protein extract.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Global analysis of protein expression in yeast

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Shotgun collision-induced dissociation of peptides using a time of flight mass analyzer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Mass spectrometry-based proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Independent control of ion transmission in a jet disrupter dual-channel ion funnel electrospray ionization MS interface

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Practical implications of some recent studies in electrospray ionization fundamentals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4417682

Examining the proteome of Drosophila across organism lifespan.

21 June 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-014-0981-1

Ionization and transmission efficiency in an electrospray ionization-mass spectrometry interface.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-014-0981-1

A dual pressure linear ion trap Orbitrap instrument with very high sequencing speed.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-014-0981-1

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-014-0981-1

Approaching complete peroxisome characterization by gas-phase fractionation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-014-0981-1

Genome-specific gas-phase fractionation strategy for improved shotgun proteomic profiling of proteotypic peptides.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-014-0981-1

Use of statistical methods for estimation of total number of charges in a mass spectrometry experiment

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-014-0981-1

Evaluation and optimization of ion-current ratio measurements by selected-ion-monitoring mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-014-0981-1

An Ion Funnel Interface for Improved Ion Focusing and Sensitivity Using Electrospray Ionization Mass Spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-014-0981-1

Characterization of an Improved Electrodynamic Ion Funnel Interface for Electrospray Ionization Mass Spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-014-0981-1

An electrodynamic ion funnel interface for greater sensitivity and higher throughput with linear ion trap mass spectrometers

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS13361-014-0981-1

Quantitative proteomic analysis by accurate mass retention time pairs

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25261218

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1007/S13361-014-0981-1

1 reference

Dimensions Publication ID

18 September 2017

0 references

1 reference

18 September 2017

PubMed publication ID

25261218

1 reference