Expediting topology data gathering for the TOPDB database (Q30869235)

16 November 2017

Expediting topology data gathering for the TOPDB database (English)

1 reference

16 November 2017

0 references

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25392424%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

Gábor E. Tusnády

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25392424%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

author name string

Tamás Langó

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25392424%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

István Reményi

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25392424%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

language of work or name

English

0 references

publication date

11 November 2014

1 reference

16 November 2017

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25392424%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

volume

43

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25392424%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

issue

Database issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25392424%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

page(s)

D283-9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25392424%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution-NonCommercial 4.0 International

8 June 2020

copyright license

start time

9 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Accurate de novo structure prediction of large transmembrane protein domains using fragment-assembly and correlated mutation analysis

21 June 2018

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Knowledge-based potential for positioning membrane-associated structures and assessing residue-specific energetic contributions

21 June 2018

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21 June 2018

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21 June 2018

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TMPad: an integrated structural database for helix-packing folds in transmembrane proteins

21 June 2018

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CoBaltDB: Complete bacterial and archaeal orfeomes subcellular localization database and associated resources

21 June 2018

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MeMotif: a database of linear motifs in alpha-helical transmembrane proteins

21 June 2018

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MetaTM - a consensus method for transmembrane protein topology prediction

21 June 2018

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New structural arrangement of the extracellular regions of the phosphate transporter SLC20A1, the receptor for gibbon ape leukemia virus

21 June 2018

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Transmembrane protein topology prediction using support vector machines

21 June 2018

1 reference

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Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins

21 June 2018

1 reference

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Glycoproteomics analysis of human liver tissue by combination of multiple enzyme digestion and hydrazide chemistry

21 June 2018

1 reference

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Transmembrane topology and signal peptide prediction using dynamic bayesian networks

21 June 2018

1 reference

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Non-invasive topology analysis of membrane proteins in the secretory pathway

21 June 2018

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MemBrain: improving the accuracy of predicting transmembrane helices

21 June 2018

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Prediction of membrane-protein topology from first principles

21 June 2018

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21 June 2018

1 reference

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TOPDOM: database of domains and motifs with conservative location in transmembrane proteins

21 June 2018

1 reference

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The role of hydrophobic interactions in positioning of peripheral proteins in membranes

21 June 2018

1 reference

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Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server

21 June 2018

1 reference

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A global topology map of the Saccharomyces cerevisiae membrane proteome

21 June 2018

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Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins

21 June 2018

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21 June 2018

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OPM: orientations of proteins in membranes database

21 June 2018

1 reference

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21 June 2018

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21 June 2018

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PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank

21 June 2018

1 reference

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TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates.

21 June 2018

1 reference

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Transmembrane proteins in the Protein Data Bank: identification and classification.

21 June 2018

1 reference

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Lipid-protein interactions in biological membranes: a structural perspective

21 June 2018

1 reference

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Novel topology in C-terminal region of the human plasma membrane anion exchanger, AE1.

21 June 2018

1 reference

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Rapid topology mapping of Escherichia coli inner-membrane proteins by prediction and PhoA/GFP fusion analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383934

The HMMTOP transmembrane topology prediction server

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383934

Determining the structure and mechanism of the human multidrug resistance P-glycoprotein using cysteine-scanning mutagenesis and thiol-modification techniques

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383934

A hidden Markov model for predicting transmembrane helices in protein sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383934

Principles governing amino acid composition of integral membrane proteins: application to topology prediction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383934

Transmembrane organization of mouse P-glycoprotein determined by epitope insertion and immunofluorescence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383934

Determination of the distance between the oligosaccharyltransferase active site and the endoplasmic reticulum membrane

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383934

Reporter epitopes: A novel approach to examine transmembrane topology of integral membrane proteins applied to the .alpha.1 subunit of the nicotinic acetylcholine receptor

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383934

TnphoA: a transposon probe for protein export signals

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383934

Genetic and biochemical evaluation of eucaryotic membrane protein topology: multiple transmembrane domains of Saccharomyces cerevisiae 3-hydroxy-3-methylglutaryl coenzyme A reductase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383934

Beta-lactamase as a probe of membrane protein assembly and protein export

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383934

Permissive sites and topology of an outer membrane protein with a reporter epitope

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383934

Reliability measures for membrane protein topology prediction algorithms.

21 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU1119

Experimentally based topology models for E. coli inner membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU1119

Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU1119

Rapid protein-folding assay using green fluorescent protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKU1119

Transmembrane orientation of an early biosynthetic form of acetylcholine receptor delta subunit determined by proteolytic dissection in conjunction with monoclonal antibodies

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4383934

Topology mapping of the amino-terminal half of multidrug resistance-associated protein by epitope insertion and immunofluorescence

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25392424

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Epitope insertion favors a six transmembrane domain model for the carboxy-terminal portion of the multidrug resistance-associated protein

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25392424

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKU1119

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25392424%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

DBLP publication ID

journals/nar/DobsonLRT15

1 reference

DBLP Dataset 2021-01-02

release_e4rf4qrt65d67mdrq3pmhc76qi

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/e4rf4qrt65d67mdrq3pmhc76qi

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25392424%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

PubMed publication ID

25392424

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25392424%20AND%20SRC:MED&resulttype=core&format=json