Small molecule annotation for the Protein Data Bank (Q30872013)

12 November 2017

Small molecule annotation for the Protein Data Bank (English)

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12 November 2017

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1

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12 November 2017

Ezra Peisach

14

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John M Berrisford

John M Berrisford

3

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Jasmine Young

Jasmine Young

2

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Matthew J Conroy

Matthew J Conroy

5

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Abhik Mukhopadhyay

Abhik Mukhopadhyay

16

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Luigi Di Costanzo

Luigi Di Costanzo

7

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Chenghua Shao

21

Chenghua Shao

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12 November 2017

15

Irina Persikova

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12 November 2017

20

Monica Sekharan

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12 November 2017

Shuchismita Dutta

6

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ORCID Public Data File 2021

author name string

Minyu Chen

4

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12 November 2017

Guanghua Gao

8

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12 November 2017

Sutapa Ghosh

9

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12 November 2017

Brian P Hudson

10

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12 November 2017

Reiko Igarashi

11

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12 November 2017

Yumiko Kengaku

12

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12 November 2017

Yuhe Liang

13

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12 November 2017

Buvaneswari Coimbatore Narayanan

17

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12 November 2017

Gaurav Sahni

18

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12 November 2017

Junko Sato

19

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12 November 2017

Lihua Tan

22

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12 November 2017

Marina A Zhuravleva

23

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12 November 2017

25 November 2014

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12 November 2017

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12 November 2017

2014

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12 November 2017

bau116

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Chemical annotation of small and peptide-like molecules at the Protein Data Bank

12 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

PDBe: Protein Data Bank in Europe

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

Recommendations of the wwPDB NMR Validation Task Force

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

How community has shaped the Protein Data Bank

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

Selective and brain-permeable polo-like kinase-2 (Plk-2) inhibitors that reduce α-synuclein phosphorylation in rat brain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

InChI - the worldwide chemical structure identifier standard

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

The RCSB Protein Data Bank: new resources for research and education

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

Implementing an X-ray validation pipeline for the Protein Data Bank

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

Outcome of the first electron microscopy validation task force meeting

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

Reorganizing the protein space at the Universal Protein Resource (UniProt)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

A new generation of crystallographic validation tools for the protein data bank

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

Overview of the CCP4 suite and current developments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

On-line optical and X-ray spectroscopies with crystallography: an integrated approach for determining metalloprotein structures in functionally well defined states

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

Crystal structures of the starch-binding domain from Rhizopus oryzae glucoamylase reveal a polysaccharide-binding path

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

NORINE: a database of nonribosomal peptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

The Uppsala Electron-Density Server

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

Retrieval of crystallographically-derived molecular geometry information.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

Improved methods for building protein models in electron density maps and the location of errors in these models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

21 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FDATABASE%2FBAU116

SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDATABASE%2FBAU116

Automatic generation of 3D-atomic coordinates for organic molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDATABASE%2FBAU116

Database clustering with a combination of fingerprint and maximum common substructure methods.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDATABASE%2FBAU116

Data Deposition and Annotation at the Worldwide Protein Data Bank

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDATABASE%2FBAU116

[30] Macromolecular crystallographic information file

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FDATABASE%2FBAU116

Macromolecular Crystallographic Information File

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4243272

25 November 2018

Identifiers

DOI

10.1093/DATABASE/BAU116

1 reference

12 November 2017

1 reference

12 November 2017

PubMed publication ID

25425036

1 reference