VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data (Q30885984)

14 November 2017

VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data (English)

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14 November 2017

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Cedric C Laczny

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Paul Wilmes

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Paul Wilmes

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Laurens van der Maaten

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Laurens van der Maaten

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14 November 2017

Tomasz Sternal

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14 November 2017

Valentin Plugaru

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14 November 2017

Piotr Gawron

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14 November 2017

Arash Atashpendar

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14 November 2017

Houry Hera Margossian

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14 November 2017

Sergio Coronado

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14 November 2017

Nikos Vlassis

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14 November 2017

20 January 2015

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14 November 2017

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Creative Commons Attribution 4.0 International

14 November 2017

start time

20 January 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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exact match

https://scigraph.springernature.com/pub.10.1186/s40168-014-0066-1

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cites work

GroopM: an automated tool for the recovery of population genomes from related metagenomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

Binning metagenomic contigs by coverage and composition

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

Alignment-free visualization of metagenomic data by nonlinear dimension reduction.

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

Tackling soil diversity with the assembly of large, complex metagenomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

Kraken: ultrafast metagenomic sequence classification using exact alignments

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

Metagenomic species profiling using universal phylogenetic marker genes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

The binning of metagenomic contigs for microbial physiology of mixed cultures

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

Structure, function and diversity of the healthy human microbiome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

Enterotypes of the human gut microbiome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

A human gut microbial gene catalogue established by metagenomic sequencing

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

Community-wide analysis of microbial genome sequence signatures

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

The dynamic genetic repertoire of microbial communities

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

Environmental genome shotgun sequencing of the Sargasso Sea

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

Community structure and metabolism through reconstruction of microbial genomes from the environment

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

Informatics for unveiling hidden genome signatures

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

Dinucleotide relative abundance extremes: a genomic signature

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4305225

10.1186/S40168-014-0066-1

25 November 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

14 November 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s40168-014-0066-1

1 reference

14 November 2017

1 reference