Efficient processing and analysis of large-scale light-sheet microscopy data (Q31000174)

28 June 2017

Efficient processing and analysis of large-scale light-sheet microscopy data (English)

1 reference

28 June 2017

Yinan Wan

3

0 references

Philipp J Keller

object named as

Philipp J Keller

series ordinal

6

0 references

William C Lemon

object named as

William C Lemon

series ordinal

4

0 references

Fernando Amat

series ordinal

1

object named as

Amat F

1 reference

28 June 2017

2

Höckendorf B

1 reference

28 June 2017

5

McDole K

1 reference

PubMed ID

26426501

28 June 2017

language of work or name

English

0 references

publication date

1 October 2015

1 reference

28 June 2017

1 reference

28 June 2017

10

1 reference

28 June 2017

1679-1696

1 reference

28 June 2017

11

1 reference

Orthogonal-plane fluorescence optical sectioning: three-dimensional imaging of macroscopic biological specimens.

28 June 2017

2 references

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

21 January 2018

https://pubmed.ncbi.nlm.nih.gov/26426501

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Thin laser light sheet microscope for microbial oceanography

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Optical sectioning deep inside live embryos by selective plane illumination microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Whole-brain functional imaging at cellular resolution using light-sheet microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Spatially isotropic four-dimensional imaging with dual-view plane illumination microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Multiview light-sheet microscope for rapid in toto imaging.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

High-speed panoramic light-sheet microscopy reveals global endodermal cell dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Fast three-dimensional fluorescence imaging of activity in neural populations by objective-coupled planar illumination microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Deep and fast live imaging with two-photon scanned light-sheet microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Noninvasive imaging beyond the diffraction limit of 3D dynamics in thickly fluorescent specimens

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Quantitative fluorescence imaging of protein diffusion and interaction in living cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Imaging morphogenesis: technological advances and biological insights

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Advances in whole-embryo imaging: a quantitative transition is underway

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Light-sheet fluorescence microscopy for quantitative biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Slicing embryos gently with laser light sheets

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

The third dimension bridges the gap between cell culture and live tissue

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Light-sheet imaging for systems neuroscience

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Visualizing whole-brain activity and development at the single-cell level using light-sheet microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Live imaging of nervous system development and function using light-sheet microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Imaging in systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Reconstructing embryonic development

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Dynamic analyses of Drosophila gastrulation provide insights into collective cell migration

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Automated sorting of live C. elegans using laFACS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Mechanical control of morphogenesis by Fat/Dachsous/Four-jointed planar cell polarity pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Automated analysis of embryonic gene expression with cellular resolution in C. elegans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Analysis of cell fate from single-cell gene expression profiles in C. elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Multi-cellular rosettes in the mouse visceral endoderm facilitate the ordered migration of anterior visceral endoderm cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Specified neural progenitors sort to form sharp domains after noisy Shh signaling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

De novo inference of systems-level mechanistic models of development from live-imaging-based phenotype analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Fast functional imaging of multiple brain regions in intact zebrafish larvae using selective plane illumination microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Whole-central nervous system functional imaging in larval Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

The brain activity map project and the challenge of functional connectomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

CATMAID: collaborative annotation toolkit for massive amounts of image data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Development of the annelid axochord: insights into notochord evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Software for bead-based registration of selective plane illumination microscopy data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Automated cell lineage tracing in Caenorhabditis elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Quantitative semi-automated analysis of morphogenesis with single-cell resolution in complex embryos

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Cell lineage reconstruction of early zebrafish embryos using label-free nonlinear microscopy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Fast segmentation of stained nuclei in terabyte-scale, time resolved 3D microscopy image stacks

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Graphical model for joint segmentation and tracking of multiple dividing cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

OMERO: flexible, model-driven data management for experimental biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

In toto imaging of embryogenesis with confocal time-lapse microscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

BigDataViewer: visualization and processing for large image data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Optimization of a GCaMP Calcium Indicator for Neural Activity Imaging

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Ultrasensitive fluorescent proteins for imaging neuronal activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

A computational statistics approach for estimating the spatial range of morphogen gradients

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

OpenSPIM: an open-access light-sheet microscopy platform.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

OpenSpinMicroscopy: an open-source integrated microscopy platform.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Network anatomy and in vivo physiology of visual cortical neurons

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Advanced CLARITY for rapid and high-resolution imaging of intact tissues

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Whole-brain imaging with single-cell resolution using chemical cocktails and computational analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Fiji: an open-source platform for biological-image analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

NIH Image to ImageJ: 25 years of image analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2015.111

31 March 2020

Identifiers

DOI

10.1038/NPROT.2015.111

1 reference

PubMed ID

26426501

Dimensions Publication ID

28 June 2017

0 references

1 reference

PubMed ID

26426501