Systematic evaluation of data-independent acquisition for sensitive and reproducible proteomics-a prototype design for a single injection assay. (Q31036432)

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English	Systematic evaluation of data-independent acquisition for sensitive and reproducible proteomics-a prototype design for a single injection assay.	scientific article

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scholarly article

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4 March 2020

Systematic evaluation of data-independent acquisition for sensitive and reproducible proteomics-a prototype design for a single injection assay (English)

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4 March 2020

reproducibility

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based on heuristic

inferred from title

Jeremy L. Norris

5

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4 March 2020

Kenneth D. Greis

7

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4 March 2020

author name string

Michael R Heaven

1

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4 March 2020

Adam J Funk

2

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4 March 2020

Archie L Cobbs

3

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4 March 2020

Wendy D Haffey

4

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4 March 2020

Robert E McCullumsmith

6

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publication date

1 January 2016

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4 March 2020

Journal of Mass Spectrometry

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4 March 2020

51

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4 March 2020

1

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4 March 2020

1-11

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4 March 2020

MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712743

21 June 2018

Extending the limits of quantitative proteome profiling with data-independent acquisition and application to acetaminophen-treated three-dimensional liver microtissues.

1 reference

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21 June 2018

DIA-Umpire: comprehensive computational framework for data-independent acquisition proteomics

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21 June 2018

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

1 reference

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21 June 2018

Drift time-specific collision energies enable deep-coverage data-independent acquisition proteomics

1 reference

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21 June 2018

Data-controlled automation of liquid chromatography/tandem mass spectrometry analysis of peptide mixtures

1 reference

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21 June 2018

An automated pipeline for high-throughput label-free quantitative proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712743

21 June 2018

The PRoteomics IDEntifications (PRIDE) database and associated tools: status in 2013

1 reference

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21 June 2018

Label-free quantitative proteomics trends for protein-protein interactions

1 reference

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21 June 2018

Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712743

21 June 2018

Using iRT, a normalized retention time for more targeted measurement of peptides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712743

21 June 2018

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712743

21 June 2018

Proteomics on an Orbitrap benchtop mass spectrometer using all-ion fragmentation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712743

21 June 2018

XDIA: improving on the label-free data-independent analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712743

21 June 2018

Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712743

21 June 2018

Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712743

21 June 2018

Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712743

21 June 2018

ETISEQ--an algorithm for automated elution time ion sequencing of concurrently fragmented peptides for mass spectrometry-based proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712743

21 June 2018

Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean.

1 reference

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21 June 2018

Peroxiredoxin-6 protects against mitochondrial dysfunction and liver injury during ischemia-reperfusion in mice

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21 June 2018

UPLC/MS(E); a new approach for generating molecular fragment information for biomarker structure elucidation

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21 June 2018

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

1 reference

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21 June 2018

Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712743

21 June 2018

TANDEM: matching proteins with tandem mass spectra

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4712743

21 June 2018

Mass spectrometry-based proteomics

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21 June 2018

Identification and relative quantitation of protein mixtures by enzymatic digestion followed by capillary reversed-phase liquid chromatography-tandem mass spectrometry

1 reference

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21 January 2018

Genome-specific gas-phase fractionation strategy for improved shotgun proteomic profiling of proteotypic peptides.

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21 January 2018

Multiple Reaction Monitoring to Identify Sites of Protein Phosphorylation with High Sensitivity

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21 January 2018

Identifiers

10.1002/JMS.3716

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4 March 2020

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4 March 2020

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4 March 2020

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