A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T. (Q31060885)

12 August 2017

A comparative genomics perspective on the genetic content of the alkaliphilic haloarchaeon Natrialba magadii ATCC 43099T. (English)

1 reference

12 August 2017

0 references

1 reference

11

1 reference

28 June 2017

12

Roxanne Tapia

0 references

Tanja Woyke

15

Tanja Woyke

0 references

Julie A Maupin-Furlow

Julie A Maupin-Furlow

16

0 references

Friedhelm Pfeiffer

Friedhelm Pfeiffer

4

0 references

Jean F. Challacombe

2

Jean F Challacombe

1 reference

12 August 2017

14

Susan Lucas

1 reference

12 August 2017

8

John C Detter

1 reference

12 August 2017

9

Karen W Davenport

1 reference

12 August 2017

13

Samuel Pitluck

1 reference

12 August 2017

10

Lynne A Goodwin

1 reference

12 August 2017

Shivakumara Siddaramappa

1

1 reference

12 August 2017

Rosana E Decastro

3

1 reference

12 August 2017

Diego E Sastre

5

1 reference

12 August 2017

María I Giménez

6

1 reference

12 August 2017

Roberto A Paggi

7

1 reference

12 August 2017

language of work or name

English

0 references

publication date

4 May 2012

1 reference

12 August 2017

1 reference

12 August 2017

13

1 reference

12 August 2017

165

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-13-165

12 August 2017

0 references

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Haloquadratum walsbyi: limited diversity in a global pond

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Biosynthesis of vitamin B2: a unique way to assemble a xylene ring

21 June 2018

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E1- and ubiquitin-like proteins provide a direct link between protein conjugation and sulfur transfer in archaea

21 June 2018

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Complete genome sequence of Haloterrigena turkmenica type strain (4k)

21 June 2018

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A methylaspartate cycle in haloarchaea

21 June 2018

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A new role for coenzyme F420 in aflatoxin reduction by soil mycobacteria

21 June 2018

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Mutational and bioinformatic analysis of haloarchaeal lipobox-containing proteins.

21 June 2018

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Iron-sulfur clusters: biogenesis, molecular mechanisms, and their functional significance.

21 June 2018

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Identification and characterization of two families of F420H2-dependent reductases from Mycobacteria that catalyse aflatoxin degradation

21 June 2018

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Unexpected abundance of coenzyme F(420)-dependent enzymes in Mycobacterium tuberculosis and other actinobacteria

21 June 2018

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Shaping the archaeal cell envelope

21 June 2018

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The tetrapyrrole biosynthetic pathway and its regulation in Rhodobacter capsulatus

21 June 2018

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Sites Inferred by Metabolic Background Assertion Labeling (SIMBAL): adapting the Partial Phylogenetic Profiling algorithm to scan sequences for signatures that predict protein function

21 June 2018

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Ubiquitin-like small archaeal modifier proteins (SAMPs) in Haloferax volcanii

21 June 2018

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Identification of Archaea-specific chemotaxis proteins which interact with the flagellar apparatus

21 June 2018

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Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

21 June 2018

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Gene cloning and heterologous synthesis of a haloalkaliphilic extracellular protease of Natrialba magadii (Nep).

21 June 2018

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Compatible solute influence on nucleic acids: many questions but few answers

21 June 2018

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Physiological sites of deamidation and methyl esterification in sensory transducers of Halobacterium salinarum

21 June 2018

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Microbial life at high salt concentrations: phylogenetic and metabolic diversity

21 June 2018

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Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes

21 June 2018

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Evolutionary primacy of sodium bioenergetics

21 June 2018

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Evolution in the laboratory: The genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1

21 June 2018

1 reference

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Biosynthesis of vitamin B2: Structure and mechanism of riboflavin synthase

21 June 2018

1 reference

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Metabolism of halophilic archaea

21 June 2018

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The RAST Server: rapid annotations using subsystems technology

21 June 2018

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Analyzing patterns of microbial evolution using the mauve genome alignment system

21 June 2018

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Comparative genomics of bacterial and plant folate synthesis and salvage: predictions and validations

21 June 2018

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Three putative cation/proton antiporters from the soda lake alkaliphile Alkalimonas amylolytica N10 complement an alkali-sensitive Escherichia coli mutant

21 June 2018

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Genetic and physical mapping of DNA replication origins in Haloferax volcanii

21 June 2018

1 reference

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Insertion sequence diversity in archaea

21 June 2018

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Proteasomes from structure to function: perspectives from Archaea

21 June 2018

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Genetically engineered synthesis and structural characterization of cobalt-precorrin 5A and -5B, two new intermediates on the anaerobic pathway to vitamin B12: definition of the roles of the CbiF and CbiG enzymes

21 June 2018

1 reference

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Crystal structure of the vitamin B12 biosynthetic cobaltochelatase, CbiXS, from Archaeoglobus fulgidus

21 June 2018

1 reference

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The genome of the square archaeon Haloquadratum walsbyi : life at the limits of water activity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Molybdenum cofactor biosynthesis and molybdenum enzymes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

From genomes to function: haloarchaea as model organisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Organic compatible solutes of halotolerant and halophilic microorganisms

21 June 2018

1 reference

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Living with two extremes: conclusions from the genome sequence of Natronomonas pharaonis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

The relationship between inhibitors of eukaryotic and prokaryotic serine proteases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

The archaeal Sec-dependent protein translocation pathway.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Mauve: multiple alignment of conserved genomic sequence with rearrangements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Diversity in chemotaxis mechanisms among the bacteria and archaea.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Intragenomic heterogeneity and intergenomic recombination among haloarchaeal rRNA genes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

CbiZ, an amidohydrolase enzyme required for salvaging the coenzyme B12 precursor cobinamide in archaea

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Low-pass sequencing for microbial comparative genomics

21 June 2018

1 reference

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Comparative genomics of the vitamin B12 metabolism and regulation in prokaryotes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

The cobY gene of the archaeon Halobacterium sp. strain NRC-1 is required for de novo cobamide synthesis.

21 June 2018

1 reference

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Identification and functional analysis of enzymes required for precorrin-2 dehydrogenation and metal ion insertion in the biosynthesis of sirohaem and cobalamin in Bacillus megaterium.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Comparative genomics of thiamin biosynthesis in procaryotes. New genes and regulatory mechanisms

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Conservation of the biotin regulon and the BirA regulatory signal in Eubacteria and Archaea.

21 June 2018

1 reference

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Natrialba magadii virus phiCh1: first complete nucleotide sequence and functional organization of a virus infecting a haloalkaliphilic archaeon

21 June 2018

1 reference

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Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation

21 June 2018

1 reference

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Fast algorithms for large-scale genome alignment and comparison

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Elucidation of methanogenic coenzyme biosyntheses: from spectroscopy to genomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Tetrahedral aminopeptidase: a novel large protease complex from archaea

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Characterisation of a gene cluster involved in bacterial degradation of the cyanobacterial toxin microcystin LR.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Sequencing of flagellin genes from Natrialba magadii provides new insight into evolutionary aspects of archaeal flagellins.

21 June 2018

1 reference

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Structural enzymology of biotin biosynthesis

21 June 2018

1 reference

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The archaeal flagellum: a different kind of prokaryotic motility structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Biosynthesis of the methanogenic cofactors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

brp and blh are required for synthesis of the retinal cofactor of bacteriorhodopsin in Halobacterium salinarum

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

The structural protein E of the archaeal virus phiCh1: evidence for processing in Natrialba magadii during virus maturation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Folic acid: nutritional biochemistry, molecular biology, and role in disease processes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Two-component signal transduction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Alkaliphiles: some applications of their products for biotechnology

21 June 2018

1 reference

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In vitro synthesis of the nucleotide loop of cobalamin by Salmonella typhimurium enzymes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Thiamin biosynthesis in prokaryotes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Osmoadaptation in archaea

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

The dolichol pathway of N-linked glycosylation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Molybdenum-cofactor-containing enzymes: structure and mechanism

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Diversity of alkaliphilic halobacteria: proposals for transfer of Natronobacterium vacuolatum, Natronobacterium magadii, and Natronobacterium pharaonis to Halorubrum, Natrialba, and Natronomonas gen. nov., respectively, as Halorubrum vacuolatum comb

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

2-Sulfotrehalose, a novel osmolyte in haloalkaliphilic archaea

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Subtilases: the superfamily of subtilisin-like serine proteases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Characterization and subunit structure of the ATP synthase of the halophilic archaeon Haloferax volcanii and organization of the ATP synthase genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

The biotin-dependent enzymes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Occurrence of coenzyme F420 and its gamma-monoglutamyl derivative in nonmethanogenic archaebacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

The H+-translocating ATP synthase in Halobacterium halobium differs from F0F1-ATPase/synthase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Nucleoside diphosphate kinase from haloalkaliphilic archaeon Natronobacterium magadii: purification and characterization

21 June 2018

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Extracellular protease of Natrialba magadii: purification and biochemical characterization

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-165

Diversity of extremely halophilic bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-165

Genome-wide proteomics of Natronomonas pharaonis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-165

Diversity of Archaea in hypersaline environments characterized by molecular-phylogenetic and cultivation studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-165

Detection of an Intracellular Protease Inhibitor in Archaea

21 January 2018

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https://api.crossref.org/works/10.1186%2F1471-2164-13-165

Archaeal type III RuBisCOs function in a pathway for AMP metabolism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-165

In vivo interactions between gene products involved in the final stages of molybdenum cofactor biosynthesis in Escherichia coli

21 January 2018

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https://api.crossref.org/works/10.1186%2F1471-2164-13-165

Electron transfer proteins from the haloalkaliphilic archaeon Natronobacterium pharaonis: possible components of the respiratory chain include cytochrome bc and a terminal oxidase cytochrome ba3.

21 January 2018

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Cytochrome ba3 from Natronobacterium pharaonis--an archaeal four-subunit cytochrome-c-type oxidase.

21 January 2018

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Flagellar rotation in the archaeon Halobacterium salinarum depends on ATP.

21 January 2018

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The fla gene cluster is involved in the biogenesis of flagella in Halobacterium salinarum

21 January 2018

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The archaeal flagellum: a different kind of prokaryotic motility structure

21 January 2018

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A new type-II NADH dehydrogenase from the archaeon Acidianus ambivalens: characterization and in vitro reconstitution of the respiratory chain

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3403918

Two immunologically distinct types of protofilaments can be identified in Natrialba magadii flagella

25 November 2018

1 reference

12 December 2020

Characterization of Natronobacterium magadii phage ΦCh1, a unique archaeal phage containing DNA and RNA

1 reference

12 December 2020

Glycosyltransferases and oligosaccharyltransferases in Archaea: putative components of the N-glycosylation pathway in the third domain of life

1 reference

12 December 2020

Synthesis of tetrapyrroles by microorganisms

1 reference

12 December 2020

Systematic deletion analyses of the fla genes in the flagella operon identify several genes essential for proper assembly and function of flagella in the archaeon, Methanococcus maripaludis

1 reference

12 December 2020

Studies of the electron transport chain of the euryarcheon Halobacterium salinarum: indications for a type II NADH dehydrogenase and a complex III analog

1 reference

12 December 2020

The Lon protease from the haloalkaliphilic archaeon Natrialba magadii is transcriptionally linked to a cluster of putative membrane proteases and displays DNA-binding activity

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2164-13-165

1 reference

Dimensions Publication ID

12 August 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-13-165

1 reference

12 August 2017

1 reference