Functional and molecular characterization of the role of CTCF in human embryonic stem cell biology (Q31083191)

19 October 2017

Functional and molecular characterization of the role of CTCF in human embryonic stem cell biology (English)

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human embryonic stem cell

19 October 2017

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inferred from title

author name string

Sri Kripa Balakrishnan

1

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19 October 2017

Michael Witcher

2

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19 October 2017

Travis W Berggren

3

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19 October 2017

Beverly M Emerson

4

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19 October 2017

language of work or name

English

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publication date

3 August 2012

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19 October 2017

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19 October 2017

7

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19 October 2017

8

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19 October 2017

e42424

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Creative Commons Attribution 4.0 International

19 October 2017

start time

3 August 2012

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Specific sites in the C terminus of CTCF interact with the SA2 subunit of the cohesin complex and are required for cohesin-dependent insulation activity

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A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity.

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Human DNA methylomes at base resolution show widespread epigenomic differences

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Targeted deletion of multiple CTCF-binding elements in the human C-MYC gene reveals a requirement for CTCF in C-MYC expression

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CTCF: master weaver of the genome

21 June 2018

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The transcriptional network controlling pluripotency in ES cells

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Epigenetic silencing of the p16(INK4a) tumor suppressor is associated with loss of CTCF binding and a chromatin boundary

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Histone modifications at human enhancers reflect global cell-type-specific gene expression

21 June 2018

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Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains

21 June 2018

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Role for Med12 in regulation of Nanog and Nanog target genes

21 June 2018

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CTCF regulates cell cycle progression of alphabeta T cells in the thymus

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

Maternal depletion of CTCF reveals multiple functions during oocyte and preimplantation embryo development

21 June 2018

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Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

21 June 2018

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CTCF physically links cohesin to chromatin

21 June 2018

1 reference

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An extended transcriptional network for pluripotency of embryonic stem cells

21 June 2018

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Mass spectrometry identifies and quantifies 74 unique histone H4 isoforms in differentiating human embryonic stem cells

21 June 2018

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Stem cells, the molecular circuitry of pluripotency and nuclear reprogramming

21 June 2018

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Oct4 dependence of chromatin structure within the extended Nanog locus in ES cells

21 June 2018

1 reference

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Cohesins functionally associate with CTCF on mammalian chromosome arms

21 June 2018

1 reference

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Cohesin mediates transcriptional insulation by CCCTC-binding factor

21 June 2018

1 reference

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CTCFBSDB: a CTCF-binding site database for characterization of vertebrate genomic insulators

21 June 2018

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Genetics and epigenetics of the multifunctional protein CTCF.

21 June 2018

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High-resolution profiling of histone methylations in the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

Feeder-independent culture of human embryonic stem cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

Human embryonic stem cell genes OCT4, NANOG, STELLAR, and GDF3 are expressed in both seminoma and breast carcinoma

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

Cdx2 is required for correct cell fate specification and differentiation of trophectoderm in the mouse blastocyst

21 June 2018

1 reference

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Basic FGF and suppression of BMP signaling sustain undifferentiated proliferation of human ES cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

Poly(ADP-ribosyl)ation regulates CTCF-dependent chromatin insulation.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

Human STELLAR, NANOG, and GDF3 genes are expressed in pluripotent cells and map to chromosome 12p13, a hotspot for teratocarcinoma

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

CTCF tethers an insulator to subnuclear sites, suggesting shared insulator mechanisms across species

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

Transgenic RNAi reveals essential function for CTCF in H19 gene imprinting

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

The transcriptome profile of human embryonic stem cells as defined by SAGE

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

The c-myc insulator element and matrix attachment regions define the c-myc chromosomal domain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

Looping and interaction between hypersensitive sites in the active beta-globin locus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

CTCF mediates methylation-sensitive enhancer-blocking activity at the H19/Igf2 locus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

Methylation of a CTCF-dependent boundary controls imprinted expression of the Igf2 gene

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

Positional enhancer-blocking activity of the chicken beta-globin insulator in transiently transfected cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

The protein CTCF is required for the enhancer blocking activity of vertebrate insulators

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

An exceptionally conserved transcriptional repressor, CTCF, employs different combinations of zinc fingers to bind diverged promoter sequences of avian and mammalian c-myc oncogenes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

GATA factor activity is required for the trophoblast-specific transcriptional regulation of the mouse placental lactogen I gene

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

Transposable elements have rewired the core regulatory network of human embryonic stem cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

Developmentally regulated activation of a SINE B2 repeat as a domain boundary in organogenesis

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

LIF/STAT3 controls ES cell self-renewal and pluripotency by a Myc-dependent mechanism.

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops

25 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3411781

BMP4 initiates human embryonic stem cell differentiation to trophoblast

25 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22879976

12 December 2020

inferred from PubMed ID database lookup

Down-regulation of stem cell genes, including those in a 200-kb gene cluster at 12p13.31, is associated with in vivo differentiation of human male germ cell tumors

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22879976

12 December 2020

inferred from PubMed ID database lookup

Functional association of CTCF with the insulator upstream of the H19 gene is parent of origin-specific and methylation-sensitive

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22879976

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1371/JOURNAL.PONE.0042424

1 reference

19 October 2017

0 references

1 reference

19 October 2017

PubMed publication ID

22879976

1 reference