Random codon re-encoding induces stable reduction of replicative fitness of Chikungunya virus in primate and mosquito cells (Q31111619)

15 August 2017

Random codon re-encoding induces stable reduction of replicative fitness of Chikungunya virus in primate and mosquito cells (English)

1 reference

15 August 2017

0 references

1 reference

5

1 reference

28 June 2017

Lauriane De Fabritus

2

0 references

Xavier de Lamballerie

series ordinal

6

object named as

Xavier de Lamballerie

1 reference

15 August 2017

4

Ernest A Gould

1 reference

15 August 2017

1

Antoine Nougairede

1 reference

15 August 2017

3

Fabien Aubry

1 reference

15 August 2017

21 February 2013

1 reference

15 August 2017

1 reference

15 August 2017

9

1 reference

15 August 2017

e1003172

1 reference

15 August 2017

2

1 reference

Creative Commons Attribution 4.0 International

15 August 2017

start time

21 February 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Chikungunya virus induces a more moderate cytopathic effect in mosquito cells than in mammalian cells

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Identification of two functionally redundant RNA elements in the coding sequence of poliovirus using computer-generated design

21 June 2018

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Slow fitness recovery in a codon-modified viral genome

21 June 2018

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Early neutralizing IgG response to Chikungunya virus in infected patients targets a dominant linear epitope on the E2 glycoprotein

21 June 2018

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Chikungunya virus infection of cell lines: analysis of the East, Central and South African lineage

21 June 2018

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Replication enhancer elements within the open reading frame of tick-borne encephalitis virus and their evolution within the Flavivirus genus.

21 June 2018

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MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

21 June 2018

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Rift valley fever: recent insights into pathogenesis and prevention

21 June 2018

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Dengue: a continuing global threat

21 June 2018

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C6/36 Aedes albopictus cells have a dysfunctional antiviral RNA interference response

21 June 2018

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Evaluation of Chikungunya diagnostic assays: differences in sensitivity of serology assays in two independent outbreaks

21 June 2018

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Nonstructural NS1 proteins of several mosquito-borne Flavivirus do not inhibit TLR3 signaling

21 June 2018

1 reference

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Live attenuated influenza virus vaccines by computer-aided rational design

21 June 2018

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Genome-scale phylogenetic analyses of chikungunya virus reveal independent emergences of recent epidemics and various evolutionary rates

21 June 2018

1 reference

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Distribution of fitness effects caused by single-nucleotide substitutions in bacteriophage f1

21 June 2018

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The arrival, establishment and spread of exotic diseases: patterns and predictions

21 June 2018

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Present and future arboviral threats

21 June 2018

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Chikungunya fever: an epidemiological review of a re-emerging infectious disease

21 June 2018

1 reference

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Architecture and secondary structure of an entire HIV-1 RNA genome

21 June 2018

1 reference

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Genetic inactivation of poliovirus infectivity by increasing the frequencies of CpG and UpA dinucleotides within and across synonymous capsid region codons.

21 June 2018

1 reference

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Mosquitoes Put the Brake on Arbovirus Evolution: Experimental Evolution Reveals Slower Mutation Accumulation in Mosquito Than Vertebrate Cells

21 June 2018

1 reference

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The Crystal Structures of Chikungunya and Venezuelan Equine Encephalitis Virus nsP3 Macro Domains Define a Conserved Adenosine Binding Pocket

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Attenuation by a thousand cuts

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

21 June 2018

Selection on Codon Bias

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Expression and Evaluation of Chikungunya Virus E1 and E2 Envelope Proteins for Serodiagnosis of Chikungunya Virus Infection

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Expression of the capsid protein of Chikungunya virus in a baculovirus for serodiagnosis of Chikungunya disease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Atypical Chikungunya virus infections: clinical manifestations, mortality and risk factors for severe disease during the 2005-2006 outbreak on Réunion

21 June 2018

1 reference

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Estimating Chikungunya prevalence in La Réunion Island outbreak by serosurveys: Two methods for two critical times of the epidemic

21 June 2018

1 reference

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Virus attenuation by genome-scale changes in codon pair bias

21 June 2018

1 reference

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Arbovirus evolution in vivo is constrained by host alternation

21 June 2018

1 reference

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Multidisciplinary Prospective Study of Mother-to-Child Chikungunya Virus Infections on the Island of La Réunion

21 June 2018

1 reference

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Chikungunya virus adapts to tiger mosquito via evolutionary convergence: a sign of things to come?

21 June 2018

1 reference

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A single mutation in chikungunya virus affects vector specificity and epidemic potential

21 June 2018

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Infection with chikungunya virus in Italy: an outbreak in a temperate region

21 June 2018

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Chikungunya, an epidemic arbovirosis

21 June 2018

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Infectious clones of Chikungunya virus (La Réunion isolate) for vector competence studies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Genome microevolution of chikungunya viruses causing the Indian Ocean outbreak

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Modulation of poliovirus replicative fitness in HeLa cells by deoptimization of synonymous codon usage in the capsid region.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Effect of alternating passage on adaptation of sindbis virus to vertebrate and invertebrate cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Basic statistical considerations in virological experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Vesicular stomatitis virus evolution during alternation between persistent infection in insect cells and acute infection in mammalian cells is dominated by the persistence phase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Codon usage between genomes is constrained by genome-wide mutational processes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

An epidemic of virus disease in Southern Province, Tanganyika Territory, in 1952-53. I. Clinical features

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Techniques for hemagglutination and hemagglutination-inhibition with arthropod-borne viruses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Hemagglutination with arthropod-borne viruses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

The extent of codon usage bias in human RNA viruses and its evolutionary origin

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Genome variability and capsid structural constraints of hepatitis a virus

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

TCS: a computer program to estimate gene genealogies

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Identification of a cis-acting replication element within the poliovirus coding region

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Origin of the West Nile virus responsible for an outbreak of encephalitis in the northeastern United States

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Different trajectories of parallel evolution during viral adaptation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Papillomavirus capsid protein expression level depends on the match between codon usage and tRNA availability

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Genetic and fitness changes accompanying adaptation of an arbovirus to vertebrate and invertebrate cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

The alphaviruses: gene expression, replication, and evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

The 5′-terminal sequences of the genomic RNAs of several alphaviruses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Effects of defective interfering viruses on virus replication and pathogenesis in vitro and in vivo

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Low-usage codons in Escherichia coli, yeast, fruit fly and primates

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Adaptation studies with Ross River virus: retention of field level virulence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

Isolation of a Singh's Aedes albopictus cell clone sensitive to Dengue and Chikungunya viruses

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3578757

First cases of autochthonous dengue fever and chikungunya fever in France: from bad dream to reality!

21 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003172

The fitness effects of synonymous mutations in DNA and RNA viruses

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PPAT.1003172

Dinucleotide and stop codon frequencies in single-stranded RNA viruses

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23436995

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PPAT.1003172

1 reference

15 August 2017

1 reference

15 August 2017

1 reference

PMCID

3578757