Modulation of poliovirus replicative fitness in HeLa cells by deoptimization of synonymous codon usage in the capsid region. (Q34545765)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16537593%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

title

Modulation of poliovirus replicative fitness in HeLa cells by deoptimization of synonymous codon usage in the capsid region (English)

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17 January 2020

3

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17 January 2020

7

Olen Kew

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17 January 2020

author name string

Cara Carthel Burns

1

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17 January 2020

Jing Shaw

2

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17 January 2020

Jaume Jorba

4

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17 January 2020

Annelet Vincent

5

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17 January 2020

Jacqueline Quay

6

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17 January 2020

language of work or name

English

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publication date

1 April 2006

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17 January 2020

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17 January 2020

volume

80

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17 January 2020

page(s)

3259-3272

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17 January 2020

issue

7

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Intratypic recombination among lineages of type 1 vaccine-derived poliovirus emerging during chronic infection of an immunodeficient patient

17 January 2020

cites work

1 reference

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Evidence that the bypassing ribosome travels through the coding gap.

7 July 2018

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Serial recombination during circulation of type 1 wild-vaccine recombinant polioviruses in China

7 July 2018

1 reference

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Effect of codon optimization on expression levels of a functionally folded malaria vaccine candidate in prokaryotic and eukaryotic expression systems

7 July 2018

1 reference

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Complete genomic sequencing shows that polioviruses and members of human enterovirus species C are closely related in the noncapsid coding region

7 July 2018

1 reference

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Circulation of endemic type 2 vaccine-derived poliovirus in Egypt from 1983 to 1993

7 July 2018

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The extent of codon usage bias in human RNA viruses and its evolutionary origin

7 July 2018

1 reference

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In vivo introduction of unpreferred synonymous codons into the Drosophila Adh gene results in reduced levels of ADH protein

7 July 2018

1 reference

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Genome variability and capsid structural constraints of hepatitis a virus

7 July 2018

1 reference

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Evolution of synonymous codon usage in metazoans

7 July 2018

1 reference

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Outbreak of poliomyelitis in Hispaniola associated with circulating type 1 vaccine-derived poliovirus

7 July 2018

1 reference

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Conserved RNA secondary structures in Picornaviridae genomes

7 July 2018

1 reference

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Codon usage bias covaries with expression breadth and the rate of synonymous evolution in humans, but this is not evidence for selection

7 July 2018

1 reference

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Gene expression and molecular evolution

7 July 2018

1 reference

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Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis.

7 July 2018

1 reference

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Initial sequencing and analysis of the human genome

7 July 2018

1 reference

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Molecular evolution of a type 1 wild-vaccine poliovirus recombinant during widespread circulation in China

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Evolution of circulating wild poliovirus and of vaccine-derived poliovirus in an immunodeficient patient: a unifying model

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Evolution of the Sabin strain of type 3 poliovirus in an immunodeficient patient during the entire 637-day period of virus excretion.

7 July 2018

1 reference

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Papillomavirus capsid protein expression level depends on the match between codon usage and tRNA availability

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

How optimized is the translational machinery in Escherichia coli, Salmonella typhimurium and Saccharomyces cerevisiae?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Codon usage and gene function are related in sequences of Arabidopsis thaliana

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Increased immune response elicited by DNA vaccination with a synthetic gp120 sequence with optimized codon usage

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Codon usage bias and tRNA abundance in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Structure of poliovirus type 2 Lansing complexed with antiviral agent SCH48973: comparison of the structural and biological properties of three poliovirus serotypes

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Problems of translating heterologous genes in expression systems: the role of tRNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

What drives codon choices in human genes?

7 July 2018

1 reference

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PCR engineering of viral quasispecies: a new method to preserve and manipulate genetic diversity of RNA virus populations.

7 July 2018

1 reference

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Why is CpG suppressed in the genomes of virtually all small eukaryotic viruses but not in those of large eukaryotic viruses?

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

7 July 2018

Genetics of poliovirus

1 reference

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Selection intensity for codon bias

7 July 2018

1 reference

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Genetic stability and mutant selection in Sabin 2 strain of oral poliovirus vaccine grown under different cell culture conditions

7 July 2018

1 reference

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Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides

7 July 2018

1 reference

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Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli

7 July 2018

1 reference

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7 July 2018

Codon selection in yeast

1 reference

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Mononucleotide and dinucleotide frequencies, and codon usage in poliovirion RNA

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Molecular cloning of poliovirus cDNA and determination of the complete nucleotide sequence of the viral genome

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Primary structure, gene organization and polypeptide expression of poliovirus RNA.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Molecular variation of type 1 vaccine-related and wild polioviruses during replication in humans

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Complete nucleotide sequences of all three poliovirus serotype genomes. Implication for genetic relationship, gene function and antigenic determinants.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Codon usage can affect efficiency of translation of genes inEscherichia coli

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Gene order of the poliovirus capsid proteins

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

In vitro molecular genetics as a tool for determining the differential cleavage specificities of the poliovirus 3C proteinase

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

The nucleotide sequence of a type 3 poliovirus isolated during a recent outbreak of poliomyelitis in Finland.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Mapping of sequences required for mouse neurovirulence of poliovirus type 2 Lansing

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

In vitro phenotypic markers of a poliovirus recombinant constructed from infectious cDNA clones of the neurovirulent Mahoney strain and the attenuated Sabin 1 strain

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

The effect of sequences in the 5' non-coding region on the replication of polioviruses in the human gut.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Codon replacement in the PGK1 gene of Saccharomyces cerevisiae: experimental approach to study the role of biased codon usage in gene expression

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Errors and alternatives in reading the universal genetic code.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Sequence of the genome RNA of rubella virus: evidence for genetic rearrangement during togavirus evolution

7 July 2018

1 reference

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Antigenic structure of picornaviruses

7 July 2018

1 reference

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The 'effective number of codons' used in a gene

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

The selection-mutation-drift theory of synonymous codon usage

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Recent evidence for evolution of the genetic code

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

RNA molecular weight determinations by gel electrophoresis under denaturing conditions, a critical reexamination

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Translation of poliovirus rna in vitro: Changes in cleavage pattern and initiation sites by ribosomal salt wash

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Separation of quantitation of intracellular forms of poliovirus RNA by agarose gel electrophoresis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

The vaccine origin of the 1968 epidemic of type 3 poliomyelitis in Poland.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Preparation and characterization of encephalomyocarditis (EMC) virus

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

Control of haemoglobin synthesis: rate of translation of the messenger RNA for the alpha and beta chains.

27 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1440415

On the mechanism of leftward frameshifting at several hungry codons

27 October 2018

1 reference

12 December 2020

Mutations in Sabin 2 strain of poliovirus and stability of attenuation phenotype

1 reference

12 December 2020

Translational selection on codon usage in Xenopus laevis

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12 December 2020

Translational selection and molecular evolution

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12 December 2020

Prevalence of vaccine-derived polioviruses in the environment

1 reference

12 December 2020

Initiation factor preparations from poliovirus-infected cells restrict translation in reticulocyte lysates

1 reference

12 December 2020

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes

1 reference

12 December 2020

Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting tran

1 reference

12 December 2020

Re-evaluation of HeLa, HeLa S3, and HEp-2 karyotypes

1 reference

12 December 2020

Genetic basis of attenuation of the Sabin type 2 vaccine strain of poliovirus in primates

1 reference

12 December 2020

Tripartite genome organization of a natural type 2 vaccine/nonvaccine recombinant poliovirus

1 reference

12 December 2020

10.1128/JVI.80.7.3259-3272.2006

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16537593%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16537593%20AND%20SRC:MED&resulttype=core&format=json

17 January 2020

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