A computational strategy to analyze label-free temporal bottom-up proteomics data (Q31153822)

17 August 2017

A computational strategy to analyze label-free temporal bottom-up proteomics data (English)

1 reference

17 August 2017

3

Nathan P Manes

1 reference

17 August 2017

Joshua N Adkins

4

0 references

Timothy J. Donohue

object named as

Timothy J Donohue

9

0 references

Richard D. Smith

object named as

Richard D Smith

11

0 references

Stephen J Callister

2

object named as

Stephen J Callister

1 reference

17 August 2017

12

Mary S Lipton

1 reference

17 August 2017

Xiuxia Du

1

1 reference

17 August 2017

Roxana A Alexandridis

5

1 reference

17 August 2017

Xiaohua Zeng

6

1 reference

17 August 2017

Jung Hyeob Roh

7

1 reference

17 August 2017

William E Smith

8

1 reference

17 August 2017

Samuel Kaplan

10

1 reference

17 August 2017

29 April 2008

1 reference

Journal of Proteome Research

17 August 2017

1 reference

17 August 2017

7

1 reference

17 August 2017

7

1 reference

17 August 2017

2595-2604

1 reference

VIPER: an advanced software package to support high-throughput LC-MS peptide identification

17 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

Normalization regarding non-random missing values in high-throughput mass spectrometry data.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

Robust algorithm for alignment of liquid chromatography-mass spectrometry analyses in an accurate mass and time tag data analysis pipeline

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

Early events of Bacillus anthracis germination identified by time-course quantitative proteomics.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

Comparison of aerobic and photosynthetic Rhodobacter sphaeroides 2.4.1 proteomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

Estimating probabilities of peptide database identifications to LC-FTICR-MS observations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

PRISM: a data management system for high-throughput proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

Advances in proteomics data analysis and display using an accurate mass and time tag approach.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

EDGE: extraction and analysis of differential gene expression.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

Photoinhibition of carotenoidless reaction centers from Rhodobacter sphaeroides by visible light. Effects on protein structure and electron transport.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

Significance analysis of time course microarray experiments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

The utility of accurate mass and LC elution time information in the analysis of complex proteomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

Quantitative proteome analysis of human plasma following in vivo lipopolysaccharide administration using 16O/18O labeling and the accurate mass and time tag approach.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

Missing value estimation for DNA microarray gene expression data: local least squares imputation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

LSimpute: accurate estimation of missing values in microarray data with least squares methods

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

A Bayesian missing value estimation method for gene expression profile data

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

Missing value estimation methods for DNA microarrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

Differential carotenoid composition of the B875 and B800-850 photosynthetic antenna complexes in Rhodobacter sphaeroides 2.4.1: involvement of spheroidene and spheroidenone in adaptation to changes in light intensity and oxygen availability

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

Quantitative cancer proteomics: stable isotope labeling with amino acids in cell culture (SILAC) as a tool for prostate cancer research

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

Quantitative analysis of bacterial and mammalian proteomes using a combination of cysteine affinity tags and 15N-metabolic labeling

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2574618

Quantitative proteomics by stable isotope labeling and mass spectrometry

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18442284

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Application of Peptide LC Retention Time Information in a Discriminant Function for Peptide Identification by Tandem Mass Spectrometry

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18442284

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

An accurate mass tag strategy for quantitative and high-throughput proteome measurements

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18442284

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/PR0704837

1 reference

17 August 2017

1 reference

17 August 2017

1 reference