Knowledge-based structure prediction of MHC class I bound peptides: a study of 23 complexes (Q31934059)

5 July 2017

Knowledge-based structure prediction of MHC class I bound peptides: a study of 23 complexes (English)

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5 July 2017

Schueler-Furman O

1

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PubMed ID

9889166

5 July 2017

Elber R

series ordinal

2

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PubMed ID

9889166

5 July 2017

Margalit H

series ordinal

3

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5 July 2017

1 January 1998

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5 July 2017

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5 July 2017

3

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5 July 2017

6

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5 July 2017

549-564

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Interactions between immunogenic peptides and MHC proteins

5 July 2017

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Structure of peptides associated with class I and class II MHC molecules

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

The epitopes of influenza nucleoprotein recognized by cytotoxic T lymphocytes can be defined with short synthetic peptides

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Prominent role of secondary anchor residues in peptide binding to HLA-A2.1 molecules

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Tolerance to amino acid variations in peptides binding to the major histocompatibility complex class I protein H-2Kb

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Antigenic peptide binding by class I and class II histocompatibility proteins

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

The three-dimensional structure of peptide-MHC complexes

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

The antigenic identity of peptide-MHC complexes: a comparison of the conformations of five viral peptides presented by HLA-A2

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Emerging principles for the recognition of peptide antigens by MHC class I molecules

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Different length peptides bind to HLA-Aw68 similarly at their ends but bulge out in the middle

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Comparison of the P2 specificity pocket in three human histocompatibility antigens: HLA-A*6801, HLA-A*0201, and HLA-B*2705.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Computing the structure of bound peptides. Application to antigen recognition by class I major histocompatibility complex receptors

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Flexible docking of peptides to class I major-histocompatibility-complex receptors

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Computation of the binding of fully flexible peptides to proteins with flexible side chains.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Free energy mapping of class I MHC molecules and structural determination of bound peptides

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Ranking potential binding peptides to MHC molecules by a computational threading approach

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Computational determination of side chain specificity for pockets in class I MHC molecules

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

On the calculation of binding free energies using continuum methods: application to MHC class I protein-peptide interactions

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

A structure-based algorithm to predict potential binding peptides to MHC molecules with hydrophobic binding pockets

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Determining protein loop conformation using scaling-relaxation techniques

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Toward computational determination of peptide-receptor structure.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

A new approach to the rapid determination of protein side chain conformations

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Backbone-dependent rotamer library for proteins. Application to side-chain prediction

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

The dead-end elimination theorem and its use in protein side-chain positioning

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

The fuzzy-end elimination theorem: correctly implementing the side chain placement algorithm based on the dead-end elimination theorem

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

A method to configure protein side-chains from the main-chain trace in homology modelling

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

The Protein Data Bank: a computer-based archival file for macromolecular structures

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Prediction of protein side-chain conformation by packing optimization.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Prediction of protein side-chain conformations by principal component analysis for fixed main-chain atoms.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Conformation of amino acid side-chains in proteins

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Determinants of protein side-chain packing

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

All in one: a highly detailed rotamer library improves both accuracy and speed in the modelling of sidechains by dead-end elimination

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Prediction of protein side chain conformations: a study on the influence of backbone accuracy on conformation stability in the rotamer space.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Construction of side-chains in homology modelling. Application to the C-terminal lobe of rhizopuspepsin

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Prediction of protein side-chain conformations from local three-dimensional homology relationships

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

The use of position-specific rotamers in model building by homology

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Bayesian statistical analysis of protein side-chain rotamer preferences

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Rotamers: to be or not to be? An analysis of amino acid side-chain conformations in globular proteins.

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Modeling side-chain conformation

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

The use of side-chain packing methods in modeling bacteriophage repressor and cro proteins

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Antagonist HIV-1 Gag peptides induce structural changes in HLA B8

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

The three-dimensional structure of an H-2Ld-peptide complex explains the unique interaction of Ld with beta-2 microglobulin and peptide

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

The interpretation of protein structures: Estimation of static accessibility

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Interior and surface of monomeric proteins

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https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Three-dimensional structure of a peptide extending from one end of a class I MHC binding site

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Atomic structure of a human MHC molecule presenting an influenza virus peptide

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

The three-dimensional structure of a class I major histocompatibility complex molecule missing the alpha 3 domain of the heavy chain

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

The three-dimensional structure of HLA-B27 at 2.1 A resolution suggests a general mechanism for tight peptide binding to MHC

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

An altered position of the alpha 2 helix of MHC class I is revealed by the crystal structure of HLA-B*3501

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Bound water structure and polymorphic amino acids act together to allow the binding of different peptides to MHC class I HLA-B53

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Crystal structures of two viral peptides in complex with murine MHC class I H-2Kb

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Crystal structure of an H-2Kb-ovalbumin peptide complex reveals the interplay of primary and secondary anchor positions in the major histocompatibility complex binding groove

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

The three-dimensional structure of H-2Db at 2.4 A resolution: implications for antigen-determinant selection

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

Nonclassical binding of formylated peptide in crystal structure of the MHC class Ib molecule H2-M3

1 reference

https://api.crossref.org/works/10.1016%2FS1359-0278%2898%2900070-4

7 January 2021

10.1016/S1359-0278(98)00070-4

Identifiers

DOI

1 reference

5 July 2017

1 reference

PubMed ID

9889166