BLISS: binding site level identification of shared signal-modules in DNA regulatory sequences (Q33245910)

24 July 2017

title

BLISS: binding site level identification of shared signal-modules in DNA regulatory sequences (English)

1 reference

24 July 2017

Hailong Meng

1

1 reference

24 July 2017

Arunava Banerjee

series ordinal

2

1 reference

24 July 2017

Lei Zhou

series ordinal

3

1 reference

24 July 2017

publication date

7 June 2006

1 reference

24 July 2017

1 reference

24 July 2017

volume

7

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24 July 2017

page(s)

287

1 reference

TOUCAN 2: the all-inclusive open source workbench for regulatory sequence analysis.

24 July 2017

cites work

1 reference

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Functional evolution of a cis-regulatory module

21 June 2018

1 reference

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Comparative genomics using fugu: a tool for the identification of conserved vertebrate cis-regulatory elements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526457

PhyME: a probabilistic algorithm for finding motifs in sets of orthologous sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526457

CREME: Cis-Regulatory Module Explorer for the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526457

ConSite: web-based prediction of regulatory elements using cross-species comparison

21 June 2018

1 reference

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rVISTA 2.0: evolutionary analysis of transcription factor binding sites

21 June 2018

1 reference

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A suite of web-based programs to search for transcriptional regulatory motifs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526457

Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrepresented upstream motifs

21 June 2018

1 reference

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Eukaryotic regulatory element conservation analysis and identification using comparative genomics

21 June 2018

1 reference

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Genome-wide prediction of Polycomb/Trithorax response elements in Drosophila melanogaster

21 June 2018

1 reference

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MATCH: A tool for searching transcription factor binding sites in DNA sequences

21 June 2018

1 reference

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MultiPipMaker and supporting tools: Alignments and analysis of multiple genomic DNA sequences

21 June 2018

1 reference

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Evolutionary conservation of regulatory elements in vertebrate Hox gene clusters

21 June 2018

1 reference

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TRANSFAC: transcriptional regulation, from patterns to profiles

21 June 2018

1 reference

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Functional evolution of noncoding DNA.

21 June 2018

1 reference

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Transcriptional regulatory networks in Saccharomyces cerevisiae

21 June 2018

1 reference

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DNA binding sites: representation and discovery

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526457

Specificity, free energy and information content in protein-DNA interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526457

Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526457

Gene expression profiles in normal and cancer cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526457

The eve stripe 2 enhancer employs multiple modes of transcriptional synergy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526457

Basic local alignment search tool

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526457

Regulation of even-skipped stripe 2 in the Drosophila embryo

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526457

Co-operation between enhancers modulates quantitative expression from the Drosophila Paramyosin/miniparamyosin gene in different muscle types.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526457

CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526457

Distinct Pathways Mediate UV-Induced Apoptosis in Drosophila Embryos

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526457

Anterior repression of a Drosophila stripe enhancer requires three position-specific mechanisms.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526457

Computational analysis of composite regulatory elements.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1526457

Information content and free energy in DNA--protein interactions

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16756683

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-7-287

1 reference

24 July 2017

DBLP publication ID

journals/bmcbi/MengBZ06

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

24 July 2017

1 reference