Improving the accuracy of protein secondary structure prediction using structural alignment (Q33246795)

24 July 2017

1 reference

title

Improving the accuracy of protein secondary structure prediction using structural alignment (English)

1 reference

protein structure prediction

24 July 2017

main subject

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David S Wishart

4

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author name string

Scott Montgomerie

series ordinal

1

1 reference

24 July 2017

Shan Sundararaj

series ordinal

2

1 reference

24 July 2017

Warren J Gallin

series ordinal

3

1 reference

24 July 2017

publication date

14 June 2006

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24 July 2017

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24 July 2017

volume

7

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24 July 2017

page(s)

301

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MIPS: analysis and annotation of proteins from whole genomes in 2005.

24 July 2017

cites work

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21 June 2018

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21 June 2018

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Porter: a new, accurate server for protein secondary structure prediction

21 June 2018

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Exploring protein fold space by secondary structure prediction using data distribution method on Grid platform.

21 June 2018

1 reference

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STRIDE: a web server for secondary structure assignment from known atomic coordinates of proteins

21 June 2018

1 reference

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Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations

21 June 2018

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21 June 2018

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The structure of proteins; two hydrogen-bonded helical configurations of the polypeptide chain

21 June 2018

1 reference

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Combining local-structure, fold-recognition, and new fold methods for protein structure prediction.

21 June 2018

1 reference

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Static benchmarking of membrane helix predictions

21 June 2018

1 reference

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PSORT-B: Improving protein subcellular localization prediction for Gram-negative bacteria

21 June 2018

1 reference

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SWISS-MODEL: An automated protein homology-modeling server

21 June 2018

1 reference

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VADAR: a web server for quantitative evaluation of protein structure quality

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

META-PP: single interface to crucial prediction servers.

21 June 2018

1 reference

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3D-Jury: a simple approach to improve protein structure predictions

21 June 2018

1 reference

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The Protein Data Bank and structural genomics

21 June 2018

1 reference

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PEP: Predictions for Entire Proteomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Targeting novel folds for structural genomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Probing the structural determinants of type II' beta-turn formation in peptides and proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

EVA: large-scale analysis of secondary structure prediction

21 June 2018

1 reference

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What is the value added by human intervention in protein structure prediction?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

EVA: continuous automatic evaluation of protein structure prediction servers.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Comparing function and structure between entire proteomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Review: protein secondary structure prediction continues to rise.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Use of chemical shifts in macromolecular structure determination

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Clustering of highly homologous sequences to reduce the size of large protein databases

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Cascaded multiple classifiers for secondary structure prediction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Application of multiple sequence alignment profiles to improve protein secondary structure prediction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Enhanced genome annotation using structural profiles in the program 3D-PSSM

21 June 2018

1 reference

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Protein secondary structure prediction based on position-specific scoring matrices

21 June 2018

1 reference

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A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment.

21 June 2018

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Protein fold recognition by prediction-based threading

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Peptide rescue of an N-terminal truncation of the Stoffel fragment of taq DNA polymerase

21 June 2018

1 reference

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PHD: predicting one-dimensional protein structure by profile-based neural networks

21 June 2018

1 reference

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PHD--an automatic mail server for protein secondary structure prediction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Constrained multiple sequence alignment using XALIGN.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

The influence of amino-acid sequence on protein structure

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Prediction of protein conformation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

A new approach to protein fold recognition

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Functional bioinformatics for Arabidopsis thaliana.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Ten years of predictions ... and counting

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

A simple and fast secondary structure prediction method using hidden neural networks.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

MODBASE, a database of annotated comparative protein structure models.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Solution Structure of MTH0776 from Methanobacterium Thermoautotrophicum

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Structural Proteomics: Toward High-Throughput Structural Biology as a Tool in Functional Genomics

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1550433

Expression, purification and characterisation of a novel mutant of the human protein kinase CK2

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16774686

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Knowledge based modelling of homologous proteins, Part I: Three-dimensional frameworks derived from the simultaneous superposition of multiple structures

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16774686

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

β-Sheet secondary structure of an LDL receptor domain from complement factor I by consensus structure predictions and spectroscopy

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16774686

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Phosphorylated peptide of G protein-coupled receptor induces dimerization in activated arrestin

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1186/1471-2105-7-301

Anatomy of specific interactions between lambda repressor and operator DNA.

1 reference

5 May 2024

https://opencitations.net/index/api/v1/references/10.1186/1471-2105-7-301

Identifiers

DOI

10.1186/1471-2105-7-301

1 reference

journals/bmcbi/MontgomerieSGW06

24 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

24 July 2017

1 reference