Microarray applications in microbial ecology research (Q33253371)

24 July 2017

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title

Microarray applications in microbial ecology research (English)

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24 July 2017

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Gentry TJ

1

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24 July 2017

Wickham GS

2

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24 July 2017

Schadt CW

3

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24 July 2017

He Z

4

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24 July 2017

Zhou J

5

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24 July 2017

publication date

8 August 2006

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24 July 2017

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24 July 2017

volume

52

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24 July 2017

issue

2

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24 July 2017

page(s)

159-175

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maintained by WikiProject

24 July 2017

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Selection of optimal DNA oligos for gene expression arrays

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12 December 2020

Microbial diversity and function in soil: from genes to ecosystems

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12 December 2020

Development of a universal microarray based on the ligation detection reaction and 16S rrna gene polymorphism to target diversity of cyanobacteria

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12 December 2020

Improving the signal sensitivity and photostability of DNA hybridizations on microarrays by using dye-doped core-shell silica nanoparticles.

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12 December 2020

Fabrication of DNA microarrays on nanoengineered polymeric ultrathin film prepared by self-assembly of polyelectrolyte multilayers

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12 December 2020

probeBase: an online resource for rRNA-targeted oligonucleotide probes

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12 December 2020

Designing better probes: effect of probe size, mismatch position and number on hybridization in DNA oligonucleotide microarrays

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12 December 2020

Transcriptional and proteomic analysis of a ferric uptake regulator (fur) mutant of Shewanella oneidensis: possible involvement of fur in energy metabolism, transcriptional regulation, and oxidative stress

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12 December 2020

Measuring absolute expression with microarrays with a calibrated reference sample and an extended signal intensity range

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12 December 2020

Oligonucleotide microarrays in microbial diagnostics

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12 December 2020

Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species

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12 December 2020

Automated purification and suspension array detection of 16S rRNA from soil and sediment extracts by using tunable surface microparticles

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12 December 2020

Poly(A) polymerase modification and reverse transcriptase PCR amplification of environmental RNA.

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12 December 2020

Development and evaluation of functional gene arrays for detection of selected genes in the environment

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12 December 2020

Selection of optimal oligonucleotide probes for microarrays using multiple criteria, global alignment and parameter estimation.

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12 December 2020

Novel techniques for analysing microbial diversity in natural and perturbed environments

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12 December 2020

PROBEmer: A web-based software tool for selecting optimal DNA oligos

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12 December 2020

The Ribosomal Database Project

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12 December 2020

Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation

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12 December 2020

Metagenomics: application of genomics to uncultured microorganisms

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12 December 2020

The accuracy of ribosomal RNA comparative structure models

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12 December 2020

High diversity in DNA of soil bacteria

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12 December 2020

Evaluating single-base-pair discriminating capability of planar oligonucleotide microchips using a non-equilibrium dissociation approach.

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12 December 2020

Prokaryotic diversity--magnitude, dynamics, and controlling factors

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12 December 2020

Optimization of single-base-pair mismatch discrimination in oligonucleotide microarrays

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12 December 2020

Development of a DNA microarray chip for the identification of sludge bacteria using an unsequenced random genomic DNA hybridization method

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12 December 2020

Simultaneous recovery of RNA and DNA from soils and sediments

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12 December 2020

Microarrays for bacterial detection and microbial community analysis

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12 December 2020

Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer

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12 December 2020

Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids

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12 December 2020

PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis.

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12 December 2020

Monitoring gene expression in mixed microbial communities by using DNA microarrays

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12 December 2020

The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis

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12 December 2020

Magnetic bead hybridization to detect enterotoxigenicEscherichia colistrains associated with cattle in environmental water sources

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12 December 2020

RNA isolation from soil for bacterial community and functional analysis: evaluation of different extraction and soil conservation protocols

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12 December 2020

Selection of oligonucleotide probes for protein coding sequences

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12 December 2020

Role of filamentous microorganisms in activated sludge foaming: relationship of mycolata levels to foaming initiation and stability

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12 December 2020

Comparative genomic analysis of Vibrio cholerae: genes that correlate with cholera endemic and pandemic disease.

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12 December 2020

A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains

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12 December 2020

The isotope array, a new tool that employs substrate-mediated labeling of rRNA for determination of microbial community structure and function

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12 December 2020

Optimization strategies for DNA microarray-based detection of bacteria with 16S rRNA-targeting oligonucleotide probes

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12 December 2020

Surface plasmon resonance imaging-based protein array chip system for monitoring a hexahistidine-tagged protein during expression and purification

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12 December 2020

High-density microarray of small-subunit ribosomal DNA probes

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12 December 2020

Fingerprinting diazotroph communities in the Chesapeake Bay by using a DNA macroarray

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12 December 2020

The ribosomal database project.

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12 December 2020

Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays

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12 December 2020

Quantitative detection of microbial genes by using DNA microarrays

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12 December 2020

Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples

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12 December 2020

16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order "Rhodocyclales"

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12 December 2020

Microarray and functional gene analyses of sulfate-reducing prokaryotes in low-sulfate, acidic fens reveal cooccurrence of recognized genera and novel lineages

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12 December 2020

Mechanistic approach to the problem of hybridization efficiency in fluorescent in situ hybridization.

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12 December 2020

Isolation of high molecular weight DNA from soil for cloning into BAC vectors.

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12 December 2020

Spatial and resource factors influencing high microbial diversity in soil

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12 December 2020

Modeling of DNA microarray data by using physical properties of hybridization

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12 December 2020

Structure of ribosomal RNA

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12 December 2020

Community structure and metabolism through reconstruction of microbial genomes from the environment

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12 December 2020

Exploring microbial microevolution with microarrays

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12 December 2020

Lateral gene transfer of dissimilatory (bi)sulfite reductase revisited

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12 December 2020

ROSO: optimizing oligonucleotide probes for microarrays

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12 December 2020

Secondary structure model for 23S ribosomal RNA.

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12 December 2020

Genomic interspecies microarray hybridization: rapid discovery of three thousand genes in the maize endophyte, Klebsiella pneumoniae 342, by microarray hybridization with Escherichia coli K-12 open reading frames

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12 December 2020

Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR

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12 December 2020

Secondary structure in the target as a confounding factor in synthetic oligomer microarray design

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12 December 2020

Stable-isotope probing as a tool in microbial ecology

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12 December 2020

Differential amplification of rRNA genes by polymerase chain reaction

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12 December 2020

Optimization of an oligonucleotide microchip for microbial identification studies: a non-equilibrium dissociation approach.

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12 December 2020

Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment.

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12 December 2020

Direct detection of 16S rRNA in soil extracts by using oligonucleotide microarrays

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12 December 2020

Bacterial species determination from DNA-DNA hybridization by using genome fragments and DNA microarrays

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12 December 2020

Development and testing of a DNA macroarray to assess nitrogenase (nifH) gene diversity

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12 December 2020

Use of microarrays with different probe sizes for monitoring gene expression.

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12 December 2020

Direct profiling of environmental microbial populations by thermal dissociation analysis of native rRNAs hybridized to oligonucleotide microarrays

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12 December 2020

DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes

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12 December 2020

Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray

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12 December 2020

A dual-genome Symbiosis Chip for coordinate study of signal exchange and development in a prokaryote-host interaction

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12 December 2020

Environmental application of array technology: promise, problems and practicalities

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12 December 2020

Self-contained, fully integrated biochip for sample preparation, polymerase chain reaction amplification, and DNA microarray detection.

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12 December 2020

Optimization of diagnostic microarray for application in analysing landfill methanotroph communities under different plant covers

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12 December 2020

Microbial gene expression in soil: methods, applications and challenges

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12 December 2020

LuxArray, a high-density, genomewide transcription analysis of Escherichia coli using bioluminescent reporter strains

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12 December 2020

Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays

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12 December 2020

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

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12 December 2020

Understanding Bias in Microbial Community Analysis Techniques due to rrn Operon Copy Number Heterogeneity

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12 December 2020

Development and evaluation of microarray-based whole-genome hybridization for detection of microorganisms within the context of environmental applications

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12 December 2020

Six nonnodulating plant mutants defective for Nod factor-induced transcriptional changes associated with the legume-rhizobia symbiosis

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12 December 2020

Application of sequence-specific labeled 16S rRNA gene oligonucleotide probes for genetic profiling of cyanobacterial abundance and diversity by array hybridization

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12 December 2020

OligoArray: genome-scale oligonucleotide design for microarrays

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12 December 2020

Sequence versus Structure for the Direct Detection of 16S rRNA on Planar Oligonucleotide Microarrays

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12 December 2020

Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence

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12 December 2020

Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis

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12 December 2020

Microbial ecology and evolution: a ribosomal RNA approach

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12 December 2020

Comparative genomics of BCG vaccines by whole-genome DNA microarray

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12 December 2020

Computational improvements reveal great bacterial diversity and high metal toxicity in soil

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12 December 2020

Fingerprinting closely related xanthomonas pathovars with random nonamer oligonucleotide microarrays

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12 December 2020

Environmental genome shotgun sequencing of the Sargasso Sea

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12 December 2020

Environmental microbiology-on-a-chip and its future impacts.

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12 December 2020

Making all parts of the 16S rRNA of Escherichia coli accessible in situ to single DNA oligonucleotides.

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12 December 2020

Peptide-protein microarrays for the simultaneous detection of pathogen infections

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12 December 2020

Development and validation of a diagnostic microbial microarray for methanotrophs

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12 December 2020

Characterization of a Yellowstone hot spring microbial community by 5S rRNA sequences

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12 December 2020

Improvement of oligonucleotide probe design criteria for functional gene microarrays in environmental applications

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12 December 2020

OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach

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12 December 2020

Examining bacterial species under the specter of gene transfer and exchange

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12 December 2020

Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays

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12 December 2020

Comparative metagenomics of microbial communities

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12 December 2020

Metagenomic profiling: microarray analysis of an environmental genomic library

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12 December 2020

Manual manufacturing of oligonucleotide, DNA, and protein microchips

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12 December 2020

Analysis of environmental microbial communities by reverse sample genome probing

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12 December 2020

mRNA extraction and reverse transcription-PCR protocol for detection of nifH gene expression by Azotobacter vinelandii in soil

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12 December 2020

Parallel characterization of anaerobic toluene- and ethylbenzene-degrading microbial consortia by PCR-denaturing gradient gel electrophoresis, RNA-DNA membrane hybridization, and DNA microarray technology.

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12 December 2020

Mfold web server for nucleic acid folding and hybridization prediction

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12 December 2020

Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment

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12 December 2020

Challenges in applying microarrays to environmental studies

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12 December 2020

Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communities.

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12 December 2020

A(r)Ray of hope in analysis of the function and diversity of microbial communities.

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12 December 2020

10.1007/S00248-006-9072-6

Identifiers

DOI

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Dimensions Publication ID

24 July 2017

1005727707

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