The accuracy of ribosomal RNA comparative structure models (Q34749902)

4 August 2017

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title

The accuracy of ribosomal RNA comparative structure models (English)

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4 August 2017

Robin R Gutell

1

1 reference

PubMed ID

12127448

4 August 2017

Jung C Lee

series ordinal

2

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PubMed ID

12127448

4 August 2017

Jamie J Cannone

series ordinal

3

1 reference

4 August 2017

1 June 2002

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Current Opinion in Structural Biology

4 August 2017

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4 August 2017

12

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4 August 2017

3

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4 August 2017

301-310

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On finding all suboptimal foldings of an RNA molecule

4 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

"Well-determined" regions in RNA secondary structure prediction: analysis of small subunit ribosomal RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

An analysis of large rRNA sequences folded by a thermodynamic method.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

STRUCTURE OF A RIBONUCLEIC ACID

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Secondary structure model for 23S ribosomal RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Secondary structure comparisons between small subunit ribosomal RNA molecules from six different species

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Compilation of small ribosomal subunit RNA sequences

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Database on the structure of large ribosomal subunit RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

The European small subunit ribosomal RNA database

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Identification of base-triples in RNA using comparative sequence analysis.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

A story: unpaired adenosine bases in ribosomal RNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops"

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Involvement of a GNRA tetraloop in long-range RNA tertiary interactions

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Frequent use of the same tertiary motif by self-folding RNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Rules for RNA recognition of GNRA tetraloops deduced by in vitro selection: comparison with in vivo evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

In vitro selection of RNAs with increased tertiary structure stability

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Effects of GA mismatches on the structure and thermodynamics of RNA internal loops

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

A major family of motifs involving G.A mismatches in ribosomal RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

RNA tertiary structure mediation by adenosine platforms

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Predicting U-turns in ribosomal RNA with comparative sequence analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

A common RNA loop motif as a docking module and its function in the hammerhead ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

A common motif organizes the structure of multi-helix loops in 16 S and 23 S ribosomal RNAs

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Adenine-guanine base pairing ribosomal RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

AA.AG@helix.ends: A:A and A:G base-pairs at the ends of 16 S and 23 S rRNA helices

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

RNA tertiary interactions in the large ribosomal subunit: the A-minor motif

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

A universal mode of helix packing in RNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

The kink-turn: a new RNA secondary structure motif

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Nucleotide Sequence Studies on Yeast Phenylalanine sRNA

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

On the Nucleotide Sequence of Yeast Tyrosine Transfer RNA

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Serine Specific Transfer Ribonucleic Acids. XIV. Comparison of Nucleotide Sequences and Secondary Structure Models

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Detailed molecular model for transfer ribonucleic acid

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

5S RNA secondary structure

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Structural domains of transfer RNA molecules

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Crystal structure of a conserved ribosomal protein-RNA complex

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

A detailed view of a ribosomal active site: the structure of the L11-RNA complex

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Crystal structure of a group I ribozyme domain: principles of RNA packing

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Structure of the 30S ribosomal subunit

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

Recognition of cognate transfer RNA by the 30S ribosomal subunit

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900339-1

7 January 2021

10.1016/S0959-440X(02)00339-1

Identifiers

DOI

1 reference

4 August 2017

1 reference

PubMed ID

12127448