Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters (Q33254333)

24 July 2017

Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters (English)

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24 July 2017

7

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Boris Lenhard

object named as

Boris Lenhard

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2

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Piero Carninci

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Piero Carninci

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5

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Yoshihide Hayashizaki

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6

object named as

Yoshihide Hayashizaki

1 reference

24 July 2017

1

Jasmina Ponjavic

1 reference

24 July 2017

3

Chikatoshi Kai

1 reference

24 July 2017

Jun Kawai

4

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24 July 2017

17 August 2006

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24 July 2017

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24 July 2017

7

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24 July 2017

8

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24 July 2017

R78

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https://scigraph.springernature.com/pub.10.1186/gb-2006-7-8-r78

24 July 2017

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Heterotachy in mammalian promoter evolution

21 June 2018

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Genome-wide analysis of mammalian promoter architecture and evolution

21 June 2018

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21 June 2018

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21 June 2018

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CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis

21 June 2018

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21 June 2018

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21 June 2018

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Multilocus LD measure and tagging SNP selection with generalized mutual information

21 June 2018

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The transcriptional landscape of the mammalian genome

21 June 2018

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Promoter features related to tissue specificity as measured by Shannon entropy

21 June 2018

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Computational prediction and experimental verification of novel IdeR binding sites in the upstream sequences of Mycobacterium tuberculosis open reading frames

21 June 2018

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Genome wide analysis of Arabidopsis core promoters

21 June 2018

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Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays.

21 June 2018

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Tissue-specific codon usage and the expression of human genes

21 June 2018

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21 June 2018

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21 June 2018

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Structure and mechanism of the RNA polymerase II transcription machinery

21 June 2018

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Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Angstroms

21 June 2018

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Regulation of RNA polymerase II transcription by sequence-specific DNA binding factors

21 June 2018

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Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

21 June 2018

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Distribution of NF-kappaB-binding sites across human chromosome 22

21 June 2018

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The RNA polymerase II core promoter

21 June 2018

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Heart-specific genes revealed by expressed sequence tag (EST) sampling

21 June 2018

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The mutual information: detecting and evaluating dependencies between variables.

21 June 2018

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The RNA polymerase II core promoter: a key component in the regulation of gene expression

21 June 2018

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21 June 2018

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Large-scale analysis of the human and mouse transcriptomes

21 June 2018

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A compendium of gene expression in normal human tissues

21 June 2018

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HugeIndex: a database with visualization tools for high-density oligonucleotide array data from normal human tissues

21 June 2018

1 reference

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The comparison of gene expression from multiple cDNA libraries

21 June 2018

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Evolution of biological information

21 June 2018

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In silico analysis of gene expression patterns during early development of Xenopus laevis.

21 June 2018

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DNA binding sites: representation and discovery

21 June 2018

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Review: chromatin structural features and targets that regulate transcription

21 June 2018

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Profile hidden Markov models

21 June 2018

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Molecular genetics of the RNA polymerase II general transcriptional machinery

21 June 2018

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The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAFII60 of Drosophila

21 June 2018

1 reference

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TATA box and initiator functions in the accurate transcription of a plant minimal promoter in vitro

21 June 2018

1 reference

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The effect of changing the distance between the TATA-box and cap site by up to three base pairs on the selection of the transcriptional start site of a cloned eukaryotic gene in vitro and in vivo

21 June 2018

1 reference

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Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779604

Information content of binding sites on nucleotide sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779604

Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779604

Sequence logos: a new way to display consensus sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779604

Roles of TATA and initiator elements in determining the start site location and direction of RNA polymerase II transcription.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779604

Spacing requirements for simultaneous recognition of the adenovirus major late promoter TATAAAAG box and initiator element

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779604

Functional analysis of the murine Emr1 promoter identifies a novel purine-rich regulatory motif required for high-level gene expression in macrophages

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779604

Are residues in a protein folding nucleus evolutionarily conserved?

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779604

Sequence and spacing of TATA box elements are critical for accurate initiation from the beta-phaseolin promoter

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779604

Comparison of human adult and fetal expression and identification of 535 housekeeping/maintenance genes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779604

The application of shannon entropy in the identification of putative drug targets

31 October 2018

1 reference

12 December 2020

Detecting differentially expressed genes by relative entropy

1 reference

12 December 2020

Localization of DNA sequences necessary for transcription of the rabbit beta-globin gene in vitro

1 reference

12 December 2020

An information theoretic approach for analyzing temporal patterns of gene expression

1 reference

12 December 2020

Identifiers

DOI

10.1186/GB-2006-7-8-R78

1 reference

24 July 2017

1 reference

24 July 2017

1 reference

PubMed ID

16916456