Incorporating background frequency improves entropy-based residue conservation measures (Q33254335)

24 July 2017

Incorporating background frequency improves entropy-based residue conservation measures (English)

1 reference

24 July 2017

Kai Wang

1

1 reference

PubMed ID

16916457

24 July 2017

Ram Samudrala

series ordinal

2

1 reference

24 July 2017

17 August 2006

1 reference

24 July 2017

1 reference

24 July 2017

7

1 reference

24 July 2017

385

1 reference

Creative Commons Attribution 2.0 Generic

24 July 2017

start time

17 August 2006

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-7-385

0 references

cites work

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Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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HMM Logos for visualization of protein families

21 June 2018

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21 June 2018

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Using protein design for homology detection and active site searches

21 June 2018

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21 June 2018

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21 June 2018

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Scoring residue conservation

21 June 2018

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21 June 2018

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Evolutionary conservation in protein folding kinetics.

21 June 2018

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Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function

21 June 2018

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Profile hidden Markov models

21 June 2018

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

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Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology

21 June 2018

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An evolutionary trace method defines binding surfaces common to protein families

21 June 2018

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Information theory analysis of the relationship between primary sequence structure and ligand recognition among a class of facilitated transporters

21 June 2018

1 reference

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Average core structures and variability measures for protein families: application to the immunoglobulins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1562451

Database of homology-derived protein structures and the structural meaning of sequence alignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1562451

Information-theoretical entropy as a measure of sequence variability

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1562451

Prediction of functional specificity determinants from protein sequences using log-likelihood ratios.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1562451

Active site identification through geometry-based and sequence profile-based calculations: burial of catalytic clefts

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1562451

A maximum likelihood method for detecting functional divergence at individual codon sites, with application to gene family evolution

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1562451

Distinguishing structural and functional restraints in evolution in order to identify interaction sites.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1562451

Predicting functional sites in proteins: site-specific evolutionary models and their application to neurotransmitter transporters

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1562451

Fold-specific substitution matrices for protein classification

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1562451

Identification of functionally conserved residues with the use of entropy-variability plots

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1562451

Using orthologous and paralogous proteins to identify specificity-determining residues in bacterial transcription factors.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1562451

Protein-protein interfaces: analysis of amino acid conservation in homodimers

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1562451

Analysis and prediction of functional sub-types from protein sequence alignments.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1562451

PSIC: profile extraction from sequence alignments with position-specific counts of independent observations.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1562451

Information content and free energy in DNA--protein interactions

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16916457

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification of transcription factor binding sites in the human genome sequence

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16916457

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

An Accurate, Sensitive, and Scalable Method to Identify Functional Sites in Protein Structures

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16916457

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-7-385

1 reference

24 July 2017

journals/bmcbi/WangS06a

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

24 July 2017

1 reference

PubMed ID

16916457