Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information (Q33287800)

25 July 2017

Accurate prediction of protein secondary structure and solvent accessibility by consensus combiners of sequence and structure information (English)

1 reference

protein structure prediction

25 July 2017

0 references

0 references

Alessandro Vullo

4

0 references

Catherine Mooney

series ordinal

3

object named as

Catherine Mooney

1 reference

25 July 2017

Gianluca Pollastri

1

1 reference

PubMed ID

17570843

25 July 2017

Alberto J M Martin

series ordinal

2

1 reference

25 July 2017

14 June 2007

1 reference

25 July 2017

1 reference

25 July 2017

8

1 reference

25 July 2017

201

1 reference

Creative Commons Attribution 2.0 Generic

25 July 2017

start time

14 June 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-8-201

0 references

cites work

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A two-stage approach for improved prediction of residue contact maps.

21 June 2018

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A machine learning information retrieval approach to protein fold recognition.

21 June 2018

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Critical assessment of methods of protein structure prediction (CASP)--round 6.

21 June 2018

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Learning protein secondary structure from sequential and relational data

21 June 2018

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Three-stage prediction of protein beta-sheets by neural networks, alignments and graph algorithms.

21 June 2018

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Linear regression models for solvent accessibility prediction in proteins.

21 June 2018

1 reference

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Prediction of protein relative solvent accessibility with a two-stage SVM approach.

21 June 2018

1 reference

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Porter: a new, accurate server for protein secondary structure prediction

21 June 2018

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Accurate prediction of solvent accessibility using neural networks-based regression.

21 June 2018

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21 June 2018

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Use of a structural alphabet for analysis of short loops connecting repetitive structures

21 June 2018

1 reference

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Rosetta predictions in CASP5: successes, failures, and prospects for complete automation.

21 June 2018

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Critical assessment of methods of protein structure prediction (CASP)-round V.

21 June 2018

1 reference

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Prediction of contact maps by GIOHMMs and recurrent neural networks using lateral propagation from all four cardinal corners.

21 June 2018

1 reference

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Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles.

21 June 2018

1 reference

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Prediction of coordination number and relative solvent accessibility in proteins.

21 June 2018

1 reference

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EVA: continuous automatic evaluation of protein structure prediction servers.

21 June 2018

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Matching protein beta-sheet partners by feedforward and recurrent neural networks.

21 June 2018

1 reference

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Application of multiple sequence alignment profiles to improve protein secondary structure prediction

21 June 2018

1 reference

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Exploiting the past and the future in protein secondary structure prediction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

21 June 2018

The Protein Data Bank

1 reference

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Analysis and assessment of ab initio three-dimensional prediction, secondary structure, and contacts prediction

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

Protein secondary structure prediction based on position-specific scoring matrices

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

Knowledge-based protein secondary structure assignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

PHD: predicting one-dimensional protein structure by profile-based neural networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

Prediction of protein secondary structure at better than 70% accuracy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

Enlarged representative set of protein structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

Predicting protein secondary structure and solvent accessibility with an improved multiple linear regression method.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

Prediction of protein solvent accessibility using fuzzy k-nearest neighbor method.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

Improvement in prediction of solvent accessibility by probability profiles.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

NETASA: neural network based prediction of solvent accessibility.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

Assessment of novel fold targets in CASP4: predictions of three-dimensional structures, secondary structures, and interresidue contacts.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

Prediction of protein surface accessibility with information theory.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

Prediction of protein secondary structure at 80% accuracy.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

Improving prediction of protein secondary structure using structured neural networks and multiple sequence alignments.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913928

PredAcc: prediction of solvent accessibility

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17570843

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Improving fold recognition without folds

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17570843

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-8-201

1 reference

journals/bmcbi/PollastriMMV07

25 July 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

25 July 2017

1 reference

PubMed ID

17570843