Realm of PD-(D/E)XK nuclease superfamily revisited: detection of novel families with modified transitive meta profile searches (Q33288471)

25 July 2017

title

Realm of PD-(D/E)XK nuclease superfamily revisited: detection of novel families with modified transitive meta profile searches (English)

1 reference

25 July 2017

3

Nick V Grishin

1 reference

25 July 2017

4

Leszek Rychlewski

1 reference

25 July 2017

5

Krzysztof Ginalski

1 reference

25 July 2017

Lukasz Knizewski

1

1 reference

25 July 2017

Lisa N Kinch

series ordinal

2

1 reference

25 July 2017

publication date

20 June 2007

1 reference

25 July 2017

published in

BMC Structural Biology

1 reference

25 July 2017

volume

7

1 reference

25 July 2017

page(s)

40

1 reference

SMART 5: domains in the context of genomes and networks

25 July 2017

cites work

1 reference

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The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function

21 June 2018

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Identification of novel restriction endonuclease-like fold families among hypothetical proteins

21 June 2018

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21 June 2018

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21 June 2018

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Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks

21 June 2018

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Substrate recognition and catalysis by the Holliday junction resolving enzyme Hje.

21 June 2018

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Detecting distant homology with Meta-BASIC.

21 June 2018

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Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complex

21 June 2018

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Structural basis for octameric ring formation and DNA interaction of the human homologous-pairing protein Dmc1.

21 June 2018

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21 June 2018

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Crystal structure of type IIE restriction endonuclease EcoRII reveals an autoinhibition mechanism by a novel effector-binding fold

21 June 2018

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Crystallographic and Bioinformatic Studies on Restriction Endonucleases: Inference of Evolutionary Relationships in the &#x201C;Midnight Zone&#x201D; of Homology

21 June 2018

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21 June 2018

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21 June 2018

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Identification of water-deficit responsive genes in maritime pine (Pinus pinaster Ait.) roots

21 June 2018

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Complex restriction enzymes: NTP-driven molecular motors

21 June 2018

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Catalytic mechanisms of restriction and homing endonucleases

21 June 2018

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Analysis of type I restriction modification systems in the Neisseriaceae: genetic organization and properties of the gene products

21 June 2018

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Crystal structure of the processivity clamp loader gamma (gamma) complex of E. coli DNA polymerase III

21 June 2018

1 reference

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Structure of Hjc, a Holliday junction resolvase, from Sulfolobus solfataricus

21 June 2018

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Crystal structure of the archaeal holliday junction resolvase Hjc and implications for DNA recognition

21 June 2018

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Biochemical analysis of replication factor C from the hyperthermophilic archaeon Pyrococcus furiosus

21 June 2018

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Restriction enzyme BsoBI-DNA complex: a tunnel for recognition of degenerate DNA sequences and potential histidine catalysis

21 June 2018

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Crystal structure of the Holliday junction resolving enzyme T7 endonuclease I

21 June 2018

1 reference

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Structure and function of Cdc6/Cdc18: implications for origin recognition and checkpoint control

21 June 2018

1 reference

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SURVEY AND SUMMARY: holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories

21 June 2018

1 reference

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Recognition of a TG mismatch: the crystal structure of very short patch repair endonuclease in complex with a DNA duplex

21 June 2018

1 reference

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21 June 2018

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21 June 2018

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Protein secondary structure prediction based on position-specific scoring matrices

21 June 2018

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21 June 2018

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21 June 2018

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Toroidal structure of lambda-exonuclease

21 June 2018

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21 June 2018

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Predicting coiled-coil regions in proteins

21 June 2018

1 reference

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Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites

21 June 2018

1 reference

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Non-globular domains in protein sequences: automated segmentation using complexity measures

21 June 2018

1 reference

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A simple tool to search for sequence motifs that are conserved in BLAST outputs

21 June 2018

1 reference

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SCOP: a structural classification of proteins database for the investigation of sequences and structures

21 June 2018

1 reference

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Human herpesvirus 1 UL24 gene encodes a potential PD-(D/E)XK endonuclease

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913061

The crystal structure of the UvsW helicase from bacteriophage T4.

31 October 2018

1 reference

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PCMA: fast and accurate multiple sequence alignment based on profile consistency.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913061

Genome organization is not conserved between Bacillus cereus and Bacillus subtilis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913061

Characterization of the interaction between the restriction endonuclease McrBC from E. coli and its cofactor GTP.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1913061

Protein structure prediction of CASP5 comparative modeling and fold recognition targets using consensus alignment approach and 3D assessment

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17584917

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Accurate formula for P-values of gapped local sequence and profile alignments

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17584917

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structure prediction meta server

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17584917

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1472-6807-7-40

1 reference

Dimensions Publication ID

25 July 2017

0 references

1 reference

25 July 2017

1 reference