Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy (Q33299609)

25 July 2017

Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy (English)

1 reference

25 July 2017

Guangan Hu

1

0 references

Zbynek Bozdech

object named as

Zbynek Bozdech

5

0 references

author name string

Manuel Llinás

2

1 reference

PubMed ID

17880708

25 July 2017

Jingguang Li

3

1 reference

PubMed ID

17880708

25 July 2017

Peter Rainer Preiser

4

1 reference

25 July 2017

19 September 2007

1 reference

25 July 2017

1 reference

25 July 2017

8

1 reference

25 July 2017

350

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2105-8-350

25 July 2017

0 references

cites work

Selection of optimal oligonucleotide probes for microarrays using multiple criteria, global alignment and parameter estimation.

1 reference

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Core transcriptional regulatory circuitry in human embryonic stem cells

21 June 2018

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The genome of the kinetoplastid parasite, Leishmania major

21 June 2018

1 reference

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Empirical establishment of oligonucleotide probe design criteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

Transcript copy number estimation using a mouse whole-genome oligonucleotide microarray.

21 June 2018

1 reference

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YODA: selecting signature oligonucleotides

21 June 2018

1 reference

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The role of Plasmodium falciparum var genes in malaria in pregnancy.

21 June 2018

1 reference

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Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

The genome sequence of Mycoplasma mycoides subsp. mycoides SC type strain PG1T, the causative agent of contagious bovine pleuropneumonia (CBPP)

21 June 2018

1 reference

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The transcriptome of the intraerythrocytic developmental cycle of Plasmodium falciparum

21 June 2018

1 reference

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Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica

21 June 2018

1 reference

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Discovery of gene function by expression profiling of the malaria parasite life cycle

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

OligoDesign: optimal design of LNA (locked nucleic acid) oligonucleotide capture probes for gene expression profiling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

Genome sequence of the human malaria parasite Plasmodium falciparum

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

Studying genomes through the aeons: protein families, pseudogenes and proteome evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

Antigenic variation at the infected red cell surface in malaria.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

Genetics of surface antigen expression in Pneumocystis carinii

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

Exploring the new world of the genome with DNA microarrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

Exploring the metabolic and genetic control of gene expression on a genomic scale

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

Identification of common molecular subsequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

Designing better probes: effect of probe size, mismatch position and number on hybridization in DNA oligonucleotide microarrays.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

Selection of oligonucleotide probes for protein coding sequences

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

Selection of optimal DNA oligos for gene expression arrays

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

An open-source oligomicroarray standard for human and mouse

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

Sequence and analysis of chromosome 2 of Dictyostelium discoideum

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2099447

Dependence of the melting temperature of DNA on salt concentration

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17880708

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

ROSO: optimizing oligonucleotide probes for microarrays

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17880708

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-8-350

1 reference

25 July 2017

journals/bmcbi/HuLLPB07

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

25 July 2017

1 reference

PubMed ID

17880708