Design and testing of 'genome-proxy' microarrays to profile marine microbial communities (Q33306603)

25 July 2017

Design and testing of 'genome-proxy' microarrays to profile marine microbial communities (English)

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25 July 2017

1

Virginia I Rich

1 reference

PubMed ID

18028413

Konstantinos T. Konstantinidis

25 July 2017

series ordinal

2

object named as

Konstantinos Konstantinidis

1 reference

25 July 2017

3

Edward F DeLong

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PubMed ID

18028413

25 July 2017

language of work or name

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19 November 2007

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Environmental Microbiology

25 July 2017

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25 July 2017

10

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25 July 2017

2

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25 July 2017

506-521

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Bacterial rhodopsin: evidence for a new type of phototrophy in the sea

25 July 2017

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Unsuspected diversity among marine aerobic anoxygenic phototrophs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Development and validation of a diagnostic microbial microarray for methanotrophs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Urban aerosols harbor diverse and dynamic bacterial populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Quantitative detection of microbial genes by using DNA microarrays

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Genomic islands and the ecology and evolution of Prochlorococcus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Community genomics among stratified microbial assemblages in the ocean's interior

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

High vertical and low horizontal diversity of Prochlorococcus ecotypes in the Mediterranean Sea in summer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Microarray applications in microbial ecology research

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Analysis of environmental microbial communities by reverse sample genome probing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Comparative genomics of DNA fragments from six Antarctic marine planktonic bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Ecotypes of planktonic actinobacteria with identical 16S rRNA genes adapted to thermal niches in temperate, subtropical, and tropical freshwater habitats

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

GeoChip: a comprehensive microarray for investigating biogeochemical, ecological and environmental processes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Ecological significance of microdiversity: identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Parallel characterization of anaerobic toluene- and ethylbenzene-degrading microbial consortia by PCR-denaturing gradient gel electrophoresis, RNA-DNA membrane hybridization, and DNA microarray technology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Genomic insights that advance the species definition for prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Microarray oligonucleotide probes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

16S rRNA gene-based oligonucleotide microarray for environmental monitoring of the betaproteobacterial order "Rhodocyclales"

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Proteorhodopsin photosystem gene clusters exhibit co-evolutionary trends and shared ancestry among diverse marine microbial phyla

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Accurately quantifying low-abundant targets amid similar sequences by revealing hidden correlations in oligonucleotide microarray data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Proteorhodopsin photosystem gene expression enables photophosphorylation in a heterologous host

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Rapid quantitative profiling of complex microbial populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Different SAR86 subgroups harbour divergent proteorhodopsins

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Molecular ecology of the marine cyanobacterial genera Prochlorococcus and Synechococcus

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Metagenomic profiling: microarray analysis of an environmental genomic library

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Direct detection of 16S rRNA in soil extracts by using oligonucleotide microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Analysis of natural populations of Prochlorococcus spp. in the northern Red Sea using phycoerythrin gene sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Optimization of diagnostic microarray for application in analysing landfill methanotroph communities under different plant covers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Phylogenetic screening of ribosomal RNA gene-containing clones in Bacterial Artificial Chromosome (BAC) libraries from different depths in Monterey Bay.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Oligonucleotide microarray for the study of functional gene diversity in the nitrogen cycle in the environment.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Proteorhodopsin genes are distributed among divergent marine bacterial taxa

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Microarray-based detection and genotyping of viral pathogens

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Viral Discovery and Sequence Recovery Using DNA Microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

High-density microarray of small-subunit ribosomal DNA probes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Development and evaluation of functional gene arrays for detection of selected genes in the environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Development and evaluation of microarray-based whole-genome hybridization for detection of microorganisms within the context of environmental applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Molecular diversity among marine picophytoplankton as revealed by psbA analyses.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Microarrays for bacterial detection and microbial community analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Prochlorococcus ecotype abundances in the North Atlantic Ocean as revealed by an improved quantitative PCR method

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Oceanographic Basis of the Global Surface Distribution of Prochlorococcus Ecotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1462-2920.2007.01471.X

10.1111/J.1462-2920.2007.01471.X

21 January 2018

Identifiers

DOI

1 reference

25 July 2017

1 reference

PubMed ID

18028413