Detecting the molecular scars of evolution in the Mycobacterium tuberculosis complex by analyzing interrupted coding sequences (Q33322928)

25 July 2017

Detecting the molecular scars of evolution in the Mycobacterium tuberculosis complex by analyzing interrupted coding sequences (English)

1 reference

Mycobacterium tuberculosis

25 July 2017

0 references

Pablo Bifani

6

0 references

Odile Lecompte

7

object named as

Odile Lecompte

1 reference

25 July 2017

Caroline Deshayes

1

1 reference

25 July 2017

Emmanuel Perrodou

2

1 reference

25 July 2017

Daniel Euphrasie

3

1 reference

25 July 2017

Eric Frapy

4

1 reference

25 July 2017

Olivier Poch

5

1 reference

25 July 2017

Jean-Marc Reyrat

8

1 reference

25 July 2017

6 March 2008

1 reference

25 July 2017

BMC Evolutionary Biology

1 reference

25 July 2017

8

1 reference

25 July 2017

78

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-8-78

25 July 2017

0 references

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Intracellular pathogens go extreme: genome evolution in the Rickettsiales

21 June 2018

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Reconstructing the ancestor of Mycobacterium leprae: the dynamics of gene loss and genome reduction.

21 June 2018

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A non-sense mutation in the putative anti-mutator gene ada/alkA of Mycobacterium tuberculosis and M. bovis isolates suggests convergent evolution

21 June 2018

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Genome plasticity of BCG and impact on vaccine efficacy

21 June 2018

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Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?

21 June 2018

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The W-Beijing lineage of Mycobacterium tuberculosis overproduces triglycerides and has the DosR dormancy regulon constitutively upregulated

21 June 2018

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Insights into the evolutionary history of tubercle bacilli as disclosed by genetic rearrangements within a PE_PGRS duplicated gene pair

21 June 2018

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Comparative genomics of metabolic pathways in Mycobacterium species: gene duplication, gene decay and lateral gene transfer

21 June 2018

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Molecular epidemiology of tuberculosis: current insights

21 June 2018

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Frequent appearance of novel protein-coding sequences by frameshift translation

21 June 2018

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Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

21 June 2018

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Variable host-pathogen compatibility in Mycobacterium tuberculosis

21 June 2018

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Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP se

21 June 2018

1 reference

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ICDS database: interrupted CoDing sequences in prokaryotic genomes

21 June 2018

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All four Mycobacterium tuberculosis glnA genes encode glutamine synthetase activities but only GlnA1 is abundantly expressed and essential for bacterial homeostasis

21 June 2018

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Genomic deletions classify the Beijing/W strains as a distinct genetic lineage of Mycobacterium tuberculosis

21 June 2018

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MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes

21 June 2018

1 reference

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Contribution of the Mycobacterium tuberculosis MmpL protein family to virulence and drug resistance

21 June 2018

1 reference

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Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes

21 June 2018

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Characterization of three glycosyltransferases involved in the biosynthesis of the phenolic glycolipid antigens from the Mycobacterium tuberculosis complex

21 June 2018

1 reference

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Giant plasmid-encoded polyketide synthases produce the macrolide toxin of Mycobacterium ulcerans

21 June 2018

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A marked difference in pathogenesis and immune response induced by different Mycobacterium tuberculosis genotypes

21 June 2018

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The complete genome sequence of Mycobacterium bovis

21 June 2018

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Re-annotation of the genome sequence of Mycobacterium tuberculosis H37Rv

21 June 2018

1 reference

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Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains

21 June 2018

1 reference

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Role of the pks15/1 gene in the biosynthesis of phenolglycolipids in the Mycobacterium tuberculosis complex. Evidence that all strains synthesize glycosylated p-hydroxybenzoic methyl esters and that strains devoid of phenolglycolipids harbor a frame

21 June 2018

1 reference

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Disruption of the gene homologous to mammalian Nramp1 in Mycobacterium tuberculosis does not affect virulence in mice

21 June 2018

1 reference

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Comparative genome sequencing for discovery of novel polymorphisms in Bacillus anthracis

21 June 2018

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A new evolutionary scenario for the Mycobacterium tuberculosis complex

21 June 2018

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Re-annotation of genome microbial coding-sequences: finding new genes and inaccurately annotated genes

21 June 2018

1 reference

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Virulence of a Mycobacterium tuberculosis clinical isolate in mice is determined by failure to induce Th1 type immunity and is associated with induction of IFN-alpha /beta

21 June 2018

1 reference

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Massive gene decay in the leprosy bacillus

21 June 2018

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High-resolution minisatellite-based typing as a portable approach to global analysis of Mycobacterium tuberculosis molecular epidemiology

21 June 2018

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21 June 2018

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Comparative genomics uncovers large tandem chromosomal duplications in Mycobacterium bovis BCG Pasteur

21 June 2018

1 reference

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Development of the Mycobacterium bovis BCG vaccine: review of the historical and biochemical evidence for a genealogical tree

21 June 2018

1 reference

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Detecting and analyzing DNA sequencing errors: toward a higher quality of the Bacillus subtilis genome sequence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277376

Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277376

Evaluation of spoligotyping in a study of the transmission of Mycobacterium tuberculosis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277376

Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277376

Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277376

Alignments of DNA and protein sequences containing frameshift errors

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277376

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277376

'DNA Strider': a 'C' program for the fast analysis of DNA and protein sequences on the Apple Macintosh family of computers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277376

The silencing of pseudogenes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277376

Loss of RD1 contributed to the attenuation of the live tuberculosis vaccines Mycobacterium bovis BCG and Mycobacterium microti

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277376

Correcting sequencing errors in DNA coding regions using a dynamic programming approach.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2277376

A glycolipid of hypervirulent tuberculosis strains that inhibits the innate immune response

31 October 2018

1 reference

12 December 2020

Widespread dissemination of a drug-susceptible strain of Mycobacterium tuberculosis

1 reference

12 December 2020

Mycobacterium tuberculosis CDC1551 induces a more vigorous host response in vivo and in vitro, but is not more virulent than other clinical isolates

1 reference

12 December 2020

Single-nucleotide polymorphism-based population genetic analysis of Mycobacterium tuberculosis strains from 4 geographic sites

1 reference

12 December 2020

Identifiers

DOI

10.1186/1471-2148-8-78

1 reference

Dimensions Publication ID

25 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2148-8-78

9 September 2019

1 reference

25 July 2017

1 reference