Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm. (Q33326985)

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5 January 2020

title

Genome-wide prediction of SH2 domain targets using structural information and the FoldX algorithm (English)

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5 January 2020

1

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5 January 2020

Pedro Beltrao

2

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5 January 2020

Joost Schymkowitz

4

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5 January 2020

Jesper Ferkinghoff-Borg

5

object named as

Jesper Ferkinghoff-Borg

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5 January 2020

author name string

Francois Stricher

3

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5 January 2020

Frederic Rousseau

6

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Luis Serrano

7

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publication date

4 April 2008

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PLOS Computational Biology

5 January 2020

published in

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volume

4

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issue

4

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5 January 2020

page(s)

e1000052

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Creative Commons Attribution 4.0 International

5 January 2020

copyright license

start time

4 April 2008

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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pp60v-src transformation of rat cells but not chicken cells strongly correlates with low-affinity phosphopeptide binding by the SH2 domain

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Thermodynamic studies of tyrosyl-phosphopeptide binding to the SH2 domain of p56lck

21 June 2018

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Comparison of binding energies of SrcSH2-phosphotyrosyl peptides with structure-based prediction using surface area based empirical parameterization

21 June 2018

1 reference

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Molecular dynamics, free energy, and SPR analyses of the interactions between the SH2 domain of Grb2 and ErbB phosphotyrosyl peptides

21 January 2018

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Prediction of binding sites of peptide recognition domains: an application on Grb2 and SAP SH2 domains

21 January 2018

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Control of Drosophila gastrulation by apical localization of adherens junctions and RhoGEF2.

21 January 2018

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Signal transduction pathways triggered by fibroblast growth factor receptor 1 expressed in Xenopus laevis oocytes after fibroblast growth factor 1 addition. Role of Grb2, phosphatidylinositol 3-kinase, Src tyrosine kinase, and phospholipase Cgamma.

21 January 2018

1 reference

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Hierarchy of simulation models in predicting molecular recognition mechanisms from the binding energy landscapes: structural analysis of the peptide complexes with SH2 domains.

21 January 2018

1 reference

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Investigation of phosphotyrosine recognition by the SH2 domain of the Src kinase

21 January 2018

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Recognizing and Defining True Ras Binding Domains II: In Silico Prediction Based on Homology Modelling and Energy Calculations

31 October 2018

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A Genome-wide Ras-Effector Interaction Network

21 January 2018

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Probabilistic model of the human protein-protein interaction network

21 January 2018

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Phosphorus-31 nuclear magnetic resonance of phosphoproteins

21 January 2018

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PubMed

https://pubmed.ncbi.nlm.nih.gov/18389064

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Calorimetric investigation of proton linkage by monitoring both the enthalpy and association constant of binding: application to the interaction of the Src SH2 domain with a high-affinity tyrosyl phosphopeptide

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18389064

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

How and why phosphotyrosine-containing peptides bind to the SH2 and PTB domains

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18389064

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.1000052

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18389064%20AND%20SRC:MED&resulttype=core&format=json

journals/ploscb/SanchezBSSFRS08

5 January 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18389064%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

1 reference