Structural determinants of protein folding. (Q33346998)

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26 January 2020

review article

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title

Structural determinants of protein folding (English)

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26 January 2020

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26 January 2020

author name string

Tse Siang Kang

series ordinal

1

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26 January 2020

publication date

15 April 2009

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Cellular and Molecular Life Sciences

26 January 2020

published in

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26 January 2020

volume

66

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26 January 2020

issue

14

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26 January 2020

page(s)

2341-2361

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Protein folding and misfolding: mechanism and principles.

26 January 2020

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Folding at the rhythm of the rare codon beat

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Efficient oxidative folding of conotoxins and the radiation of venomous cone snails

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The structure of alpha-helical coiled coils

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Analysis of the oligosaccharides on the HLA-DR and DC1 B cell antigens

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Studies of folding and misfolding using simplified models.

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NMR Structures Reveal How Oxidation Inactivates Thrombomodulin

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Crystal structure of an extensively simplified variant of bovine pancreatic trypsin inhibitor in which over one-third of the residues are alanines

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The protein non-folding problem: amino acid determinants of intrinsic order and disorder

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Role of native disulfide bonds in the structure and activity of insulin-like growth factor 1: genetic models of protein-folding intermediates.

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Protein glycosylation: new challenges and opportunities.

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12 December 2020

mof, a putative acetyl transferase gene related to the Tip60 and MOZ human genes and to the SAS genes of yeast, is required for dosage compensation in Drosophila

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12 December 2020

The folding nucleus of the insulin superfamily: a flexible peptide model foreshadows the native state

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12 December 2020

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Malleability of protein folding pathways: a simple reason for complex behaviour

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12 December 2020

Glycoengineering: the effect of glycosylation on the properties of therapeutic proteins

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A PDZ domain recapitulates a unifying mechanism for protein folding

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An active enzyme constructed from a 9-amino acid alphabet

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12 December 2020

Unusually stable helix formation in short alanine-based peptides

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12 December 2020

A proline switch controls folding and domain interactions in the gene-3-protein of the filamentous phage fd.

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12 December 2020

Conservation of cis prolyl bonds in proteins during evolution.

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12 December 2020

Adding backbone to protein folding: why proteins are polypeptides

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12 December 2020

Consequence of the removal of evolutionary conserved disulfide bridges on the structure and function of charybdotoxin and evidence that particular cysteine spacings govern specific disulfide bond formation

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12 December 2020

Protein dynamics from time resolved UV Raman spectroscopy

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12 December 2020

Effects of lysine acetylation in a beta-hairpin peptide: comparison of an amide-pi and a cation-pi interaction.

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12 December 2020

Post-translational modifications in the context of therapeutic proteins

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12 December 2020

Physical reasons for secondary structure stability: alpha-helices in short peptides

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12 December 2020

An analysis of packing in the protein folding problem

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12 December 2020

Combinatorial approaches to protein stability and structure.

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12 December 2020

A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants

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12 December 2020

Helix to helix packing in proteins

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12 December 2020

Preferential and absolute adsorption to poly[N5-(3-hydroxypropyl)-L-glutamine] in water/2-chloroethanol solvent mixtures

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12 December 2020

Elucidating the folding problem of helical peptides using empirical parameters

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12 December 2020

All-atom ab initio folding of a diverse set of proteins

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12 December 2020

Contribution of hydrophobic interactions to protein stability

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12 December 2020

The kinetics of formation of native ribonuclease during oxidation of the reduced polypeptide chain

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12 December 2020

The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding

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12 December 2020

Disulfide bonds as probes of protein folding pathways

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12 December 2020

Influence of N-methylation on a cation-pi interaction produces a remarkably stable beta-hairpin peptide

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12 December 2020

Identification and characterization of protein folding intermediates

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12 December 2020

Packing is a key selection factor in the evolution of protein hydrophobic cores

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12 December 2020

Use of helical wheels to represent the structures of proteins and to identify segments with helical potential

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Critical assessment of methods of protein structure prediction-Round VII

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12 December 2020

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12 December 2020

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Molecular moulds with multiple missions: functional sites in three-finger toxins

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12 December 2020

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12 December 2020

Design of protein conformational switches

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12 December 2020

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12 December 2020

Protein folding funnels: a kinetic approach to the sequence-structure relationship

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12 December 2020

Mechanisms of protein folding

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12 December 2020

From the first protein structures to our current knowledge of protein folding: delights and scepticisms

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12 December 2020

Principles that govern the folding of protein chains

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12 December 2020

The in vitro oxidative folding of the insulin superfamily

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12 December 2020

The influence of short-range interactions on protein onformation. II. A model for predicting the alpha-helical regions of proteins

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12 December 2020

Comparison of alpha-helix stability in peptides having a negatively or positively charged residue block attached either to the N- or C-terminus of an alpha-helix: the electrostatic contribution and anisotropic stability of the alpha-helix

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12 December 2020

Active barnase variants with completely random hydrophobic cores

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12 December 2020

Conotoxins and the posttranslational modification of secreted gene products

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12 December 2020

Sequence determinants of folding and stability for the P22 Arc repressor dimer.

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12 December 2020

Protein Folding Determinants: Structural Features Determining Alternative Disulfide Pairing in α- and χ/λ-Conotoxins † , ‡

1 reference

12 December 2020

Reverse engineering the (beta/alpha )8 barrel fold

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12 December 2020

Differential glycosylation requirements for the cell surface expression of class I molecules

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12 December 2020

Oxidative folding of omega-conotoxin MVIIC: effects of temperature and salt

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12 December 2020

Dominant forces in protein folding

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12 December 2020

lambda-conotoxins, a new family of conotoxins with unique disulfide pattern and protein folding. Isolation and characterization from the venom of Conus marmoreus

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12 December 2020

A logical OR redundancy within the Asx-Pro-Asx-Gly type I beta-turn motif

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12 December 2020

Significance of a carboxyl-terminal amide moiety in the folding and biological activity of crustacean hyperglycemic hormone.

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12 December 2020

Nucleation mechanisms in protein folding

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12 December 2020

Folding of bovine pancreatic trypsin inhibitor (BPTI) variants in which almost half the residues are alanine.

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12 December 2020

Conformation and function of the N-linked glycan in the adhesion domain of human CD2

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12 December 2020

Where does amidation take place?

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12 December 2020

Protein Folding: An unfolding story

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Effect of C-terminal amidation on folding and disulfide-pairing of alpha-conotoxin ImI

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12 December 2020

The structure of proteins; two hydrogen-bonded helical configurations of the polypeptide chain

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12 December 2020

Formation and transfer of disulphide bonds in living cells

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12 December 2020

Arginine methylation in a beta-hairpin peptide: implications for Arg-pi interactions, DeltaCp(o), and the cold denatured state

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Polyglutamylation: a fine-regulator of protein function? 'Protein Modifications: beyond the usual suspects' review series.

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12 December 2020

On the Structure of Native, Denatured, and Coagulated Proteins

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Hierarchical protein "un-design": insulin's intrachain disulfide bridge tethers a recognition alpha-helix

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12 December 2020

Peptidyl-prolyl cis-trans isomerase is the cyclosporin A-binding protein cyclophilin

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12 December 2020

Comparison of C-H...pi and hydrophobic interactions in a beta-hairpin peptide: impact on stability and specificity

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12 December 2020

A designed four helix bundle protein with native-like structure

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12 December 2020

Loss of conformational stability in calmodulin upon methionine oxidation

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What can disulfide bonds tell us about protein energetics, function and folding: simulations and bioninformatics analysis.

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Nucleation, rapid folding, and globular intrachain regions in proteins

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A conotoxin from Conus textile with unusual posttranslational modifications reduces presynaptic Ca2+ influx

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A receptor for the immunosuppressant FK506 is a cis-trans peptidyl-prolyl isomerase

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Functional rapidly folding proteins from simplified amino acid sequences.

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Theoretical approaches to protein aggregation

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Engineered disulfide bonds as probes of the folding pathway of barnase: increasing the stability of proteins against the rate of denaturation

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Mechanical unfolding of proteins: insights into biology, structure and folding.

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The structure of "unstructured" regions in peptides and proteins: role of the polyproline II helix in protein folding and recognition

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Disulphide bridges in globular proteins

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Intermediates: ubiquitous species on folding energy landscapes?

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Genetic studies of the lac repressor. XI. On aspects of lac repressor structure suggested by genetic experiments

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Role of disulfide bonds in the structure and activity of human insulin

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Locust ion transport peptide (ITP): primary structure, cDNA and expression in a baculovirus system.

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Empirical Predictions of Protein Conformation

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Tolerance of Arc repressor to multiple-alanine substitutions

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12 December 2020

2005 Emil Thomas Kaiser Award

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The importance of extended conformations and, in particular, the PII conformation for the molecular recognition of peptides

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Is there a unifying mechanism for protein folding?

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Solution conformations and aggregational properties of synthetic amyloid beta-peptides of Alzheimer's disease. Analysis of circular dichroism spectra

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The folding and evolution of multidomain proteins

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Stabilization of the collagen triple helix by O-methylation of hydroxyproline residues

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Gamma-carboxyglutamate in a neuroactive toxin.

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Large differences in the helix propensities of alanine and glycine

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The 'Asx-Pro turn' as a local structural motif stabilized by alternative patterns of hydrogen bonds and a consensus-derived model of the sequence Asn-Pro-Asn

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Carbohydrate Structures of Recombinant Human α-l-Iduronidase Secreted by Chinese Hamster Ovary Cells

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Influence of proline residues on protein conformation

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Protein-protein interactions in the membrane: sequence, structural, and biological motifs

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Protegrins: structural requirements for inactivating elementary bodies of Chlamydia trachomatis

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Regeneration of enzyme activity by air oxidation of reduced subtilisin-modified ribonuclease

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Protein folding: from the levinthal paradox to structure prediction

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G protein-coupled receptor trafficking in health and disease: lessons learned to prepare for therapeutic mutant rescue in vivo

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Direct identification of the calcium-binding amino acid, gamma-carboxyglutamate, in mineralized tissue

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Three binding sites in protein-disulfide isomerase cooperate in collagen prolyl 4-hydroxylase tetramer assembly.

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How molten is the molten globule?

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Helix geometry in proteins

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Farnesylation of the SNARE protein Ykt6 increases its stability and helical folding

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The collagen triple-helix structure

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Conformational switching upon phosphorylation: a predictive framework based on energy landscape principles.

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The sequence determinant causing different folding behaviors of insulin and insulin-like growth factor-1

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Prediction of protein conformation

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Unfolded proteins and protein folding studied by NMR.

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Biological activity of carboxy-terminal gastrin analogs

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Three-dimensional structure of a type VI turn in a linear peptide in water solution. Evidence for stacking of aromatic rings as a major stabilizing factor

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C--H...O hydrogen bond involving proline residues in alpha-helices

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Thioredoxin and its related molecules: update 2005.

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A test of the "jigsaw puzzle" model for protein folding by multiple methionine substitutions within the core of T4 lysozyme

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Structural basis for the role in protein folding of conserved proline-rich regions in cytochromes P450.

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Structural basis for control by phosphorylation

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12 December 2020

Identification of proline residues responsible for the slow folding kinetics in pectate lyase C by mutagenesis

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Elucidation of the protein folding landscape by NMR.

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Tyrosine sulfation of glycoprotein I(b)alpha. Role of electrostatic interactions in von Willebrand factor binding

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Role of disulfide bonds in folding and activity of leiurotoxin I: just two disulfides suffice

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De novo design of proteins--what are the rules?

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Temperature dependence of the hydrophobic interaction in protein folding

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Oxidative folding of conotoxins sharing an identical disulfide bridging framework

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FASTRUN: a special purpose, hardwired computer for molecular simulation

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Single-molecule studies of protein folding.

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A helix stop signal in the isolated S-peptide of ribonuclease A

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The protein folding 'speed limit'.

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Electrostatic Interactions in the Denatured State and in the Transition State for Protein Folding: Effects of Denatured State Interactions on the Analysis of Transition State Structure

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The C-peptide helix from ribonuclease A considered as an autonomous folding unit

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Deciphering the message in protein sequences: tolerance to amino acid substitutions

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Isolation and characterization of vitamin K-dependent region of bovine blood clotting factor X.

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Helix stabilization by Glu-...Lys+ salt bridges in short peptides of de novo design

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The structural role of sugars in glycoproteins

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The role of internal packing interactions in determining the structure and stability of a protein

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Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding

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Network and graph analyses of folding free energy surfaces

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12 December 2020

Evidence for sequential barriers and obligatory intermediates in apparent two-state protein folding

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Disulfide-linked protein folding pathways

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12 December 2020

Oxidation inhibits amyloid fibril formation of transthyretin.

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12 December 2020

Protein folding, unfolding and misfolding: role played by intermediate States

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The role of backbone flexibility in the accommodation of variants that repack the core of T4 lysozyme

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12 December 2020

Conformational disease

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12 December 2020

Factors governing selective formation of specific disulfides in synthetic variants of alpha-conotoxin

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12 December 2020

Simplified proteins: minimalist solutions to the 'protein folding problem'.

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12 December 2020

Structure of HP1 chromodomain bound to a lysine 9-methylated histone H3 tail

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12 December 2020

Conformational changes in conantokin-G induced upon binding of calcium and magnesium as revealed by NMR structural analysis.

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Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

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12 December 2020

The fifth epidermal growth factor-like domain of thrombomodulin does not have an epidermal growth factor-like disulfide bonding pattern

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The Levinthal paradox: yesterday and today

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12 December 2020

Modulation of protein structure and function by asparagine-linked glycosylation

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12 December 2020

Enzyme replacement for lysosomal diseases

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Effect of glycosylation on protein folding: a close look at thermodynamic stabilization

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12 December 2020

Role of hydroxyprolines in the in vitro oxidative folding and biological activity of conotoxins.

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12 December 2020

Vitamin K metabolism and nutriture

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12 December 2020

Initial sequencing and analysis of the human genome

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12 December 2020

Disulfide bridge reorganization induced by proline mutations in maurotoxin.

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12 December 2020

Human acid beta-glucosidase. N-glycosylation site occupancy and the effect of glycosylation on enzymatic activity.

1 reference

12 December 2020

Protein design by binary patterning of polar and nonpolar amino acids

1 reference

12 December 2020

10.1007/S00018-009-0023-5

Identifiers

DOI

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19367367%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

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