The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies (Q33369599)

26 July 2017

title

The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies (English)

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26 July 2017

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Lisa J Croner

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Nan Mei

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Nan Mei

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Weida Tong

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object named as

Weida Tong

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Leming Shi

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Wendell D Jones

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Huixiao Hong

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James C Fuscoe

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Wenjun Bao

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Richard Shippy

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Janet A Warrington

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Ernest S Kawasaki

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Yuling Luo

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Yongming Andrew Sun

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James C Willey

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Felix W Frueh

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Damir Herman

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Shashi Amur

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Vincent Bertholet

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Cecilie Boysen

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Xiaoxi Megan Cao

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Yaron Turpaz

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Federico M Goodsaid

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Brett Thorn

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Roderick V Jensen

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Stephen C Harris

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Roger G Perkins

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Lei Guo

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Hong Fang

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Feng Qian

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Catalin C Barbacioru

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Tzu-Ming Chu

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Patrick J Collins

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Xiao-Hui Fan

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Xu Guo

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Jing Han

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Quan-Zhen Li

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Yunqing Ma

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Ron L Peterson

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Raj K Puri

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Zhenqiang Su

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Hongmei Sun

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Charles Wang

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Sue Jane Wang

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Jie Wu

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Qian Xie

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Liang Zhang

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Lu Zhang

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Sheng Zhong

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Russell D Wolfinger

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publication date

12 August 2008

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26 July 2017

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26 July 2017

volume

9 Suppl 9

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26 July 2017

page(s)

S10

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Creative Commons Attribution 2.0 Generic

26 July 2017

copyright license

start time

1 August 2008

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Comparison of various statistical methods for identifying differential gene expression in replicated microarray data

21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Improved statistical tests for differential gene expression by shrinking variance components estimates.

21 June 2018

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Empirical evaluation of data transformations and ranking statistics for microarray analysis.

21 June 2018

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Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations

21 June 2018

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Outcome signature genes in breast cancer: is there a unique set?

21 June 2018

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Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements

21 June 2018

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Evaluation of gene expression measurements from commercial microarray platforms

21 June 2018

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21 June 2018

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Gene expression comparison of biopsies from Duchenne muscular dystrophy (DMD) and normal skeletal muscle

21 June 2018

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A stem cell molecular signature

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

"Stemness": transcriptional profiling of embryonic and adult stem cells

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

The gene expression fingerprint of human heart failure

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Microarray data analysis: a practical approach for selecting differentially expressed genes

21 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes

21 June 2018

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On differential variability of expression ratios: improving statistical inference about gene expression changes from microarray data

21 June 2018

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21 June 2018

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Microarray expression profiling identifies genes with altered expression in HDL-deficient mice

21 June 2018

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Functional discovery via a compendium of expression profiles

21 June 2018

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21 June 2018

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Quantitative monitoring of gene expression patterns with a complementary DNA microarray

21 June 2018

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21 June 2018

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Evaluation of DNA microarray results with quantitative gene expression platforms

31 October 2018

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A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2537561

Dysregulation of gene expression in the 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine-lesioned mouse substantia nigra.

31 October 2018

1 reference

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Microarray reality checks in the context of a complex disease

31 October 2018

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Genome-wide analysis of spatial gene expression in Arabidopsis flowers.

31 October 2018

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Expression profiling--best practices for data generation and interpretation in clinical trials

31 October 2018

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Multiple-laboratory comparison of microarray platforms

31 October 2018

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31 October 2018

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12 December 2020

Statistical methods and microarray data

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12 December 2020

Comment on " 'Stemness': transcriptional profiling of embryonic and adult stem cells" and "a stem cell molecular signature"

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12 December 2020

Getting the noise out of gene arrays

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12 December 2020

Prediction of cancer outcome with microarrays: a multiple random validation strategy

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12 December 2020

Experimental design for gene expression microarrays

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12 December 2020

Microarrays and molecular research: noise discovery?

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12 December 2020

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Identifiers

DOI

1 reference

journals/bmcbi/ShiJJHPGGCBFQABBBCCCFF08

26 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

26 July 2017

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