Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis (Q33393441)

26 July 2017

1 reference

title

Pep-3D-Search: a method for B-cell epitope prediction based on mimotope analysis (English)

1 reference

26 July 2017

Yan Xin Huang

1

1 reference

26 July 2017

Yong Li Bao

2

1 reference

26 July 2017

Shu Yan Guo

3

1 reference

26 July 2017

Yan Wang

4

1 reference

26 July 2017

Chun Guang Zhou

5

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26 July 2017

Yu Xin Li

6

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26 July 2017

publication date

16 December 2008

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26 July 2017

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26 July 2017

volume

9

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26 July 2017

page(s)

538

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Ant system: optimization by a colony of cooperating agents.

26 July 2017

cites work

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools

21 June 2018

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21 June 2018

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21 June 2018

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Prediction of residues in discontinuous B-cell epitopes using protein 3D structures

21 June 2018

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Improved method for predicting linear B-cell epitopes

21 June 2018

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21 June 2018

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CED: a conformational epitope database

21 June 2018

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Machine learning approaches for prediction of linear B-cell epitopes on proteins

21 June 2018

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Vaccination with cetuximab mimotopes and biological properties of induced anti-epidermal growth factor receptor antibodies

21 June 2018

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21 June 2018

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CEP: a conformational epitope prediction server.

21 June 2018

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Epitope mapping using mRNA display and a unidirectional nested deletion library

21 June 2018

1 reference

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3D-Epitope-Explorer (3DEX): localization of conformational epitopes within three-dimensional structures of proteins

21 June 2018

1 reference

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Generation of Peptide mimics of the epitope recognized by trastuzumab on the oncogenic protein Her-2/neu

21 June 2018

1 reference

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ASAView: database and tool for solvent accessibility representation in proteins

21 June 2018

1 reference

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The mapping and reconstitution of a conformational discontinuous B-cell epitope of HIV-1.

21 June 2018

1 reference

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Design of Synthetic Peptides for Diagnostics

21 June 2018

1 reference

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A new method for mapping discontinuous antibody epitopes to reveal structural features of proteins.

21 June 2018

1 reference

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A consensus tetrapeptide selected by phage display adopts the conformation of a dominant discontinuous epitope of a monoclonal anti-VWF antibody that inhibits the von Willebrand factor-collagen interaction

21 June 2018

1 reference

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SiteLight: binding-site prediction using phage display libraries

21 June 2018

1 reference

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Peptide decoys selected by phage display block in vitro and in vivo activity of a human anti-FVIII inhibitor.

21 June 2018

1 reference

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Antigenicity and immunogenicity of synthetic peptides

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639436

Analysis of antibody A6 binding to the extracellular interferon gamma receptor alpha-chain by alanine-scanning mutagenesis and random mutagenesis with phage display

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639436

Selection and analysis of an optimized anti-VEGF antibody: crystal structure of an affinity-matured Fab in complex with antigen

21 June 2018

1 reference

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21 June 2018

1 reference

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Identification of Src, Fyn, Lyn, PI3K and Abl SH3 domain ligands using phage display libraries.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639436

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639436

Hsc70-binding peptides selected from a phage display peptide library that resemble organellar targeting sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639436

Predicting antigenic determinants in proteins: looking for unidimensional solutions to a three-dimensional problem?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639436

Continuous and discontinuous protein antigenic determinants

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639436

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639436

Prediction of continuous B-cell epitopes in an antigen using recurrent neural network.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639436

Selection and combination of machine learning classifiers for prediction of linear B-cell epitopes on proteins.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639436

Discontinuous epitope prediction based on mimotope analysis.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639436

Benchmarking B cell epitope prediction: underperformance of existing methods

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639436

Immunome-derived vaccines

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639436

Novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639436

Predictive estimation of protein linear epitopes by using the program PEOPLE.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639436

Mapping Epitope Structure and Activity: From One-Dimensional Prediction to Four-Dimensional Description of Antigenic Specificity

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639436

Mapping epitopes on protein surfaces.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2639436

BEPITOPE: predicting the location of continuous epitopes and patterns in proteins

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19087303

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-9-538

1 reference

journals/bmcbi/HuangBGWZL08

26 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

26 July 2017

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