Application of homozygosity haplotype analysis to genetic mapping with high-density SNP genotype data (Q33435831)

26 July 2017

title

Application of homozygosity haplotype analysis to genetic mapping with high-density SNP genotype data (English)

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26 July 2017

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7

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26 July 2017

Haiyan Jiang

1

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26 July 2017

Andrew Orr

2

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26 July 2017

Duane L Guernsey

3

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26 July 2017

Johane Robitaille

4

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26 July 2017

Géraldine Asselin

5

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26 July 2017

Mark E Samuels

6

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26 July 2017

language of work or name

English

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publication date

28 April 2009

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26 July 2017

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26 July 2017

volume

4

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26 July 2017

issue

4

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26 July 2017

page(s)

e5280

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Creative Commons Attribution 4.0 International

26 July 2017

copyright license

start time

28 April 2009

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Identification of linked regions using high-density SNP genotype data in linkage analysis

21 June 2018

1 reference

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Mutations in the UBIAD1 gene on chromosome short arm 1, region 36, cause Schnyder crystalline corneal dystrophy.

21 June 2018

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Identification of mutations in UBIAD1 following exclusion of coding mutations in the chromosome 1p36 locus for Schnyder crystalline corneal dystrophy.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2670504

A second generation human haplotype map of over 3.1 million SNPs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2670504

Mutations in the UBIAD1 gene, encoding a potential prenyltransferase, are causal for Schnyder crystalline corneal dystrophy

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2670504

Homozygosity haplotype allows a genomewide search for the autosomal segments shared among patients.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2670504

Genotyping errors: causes, consequences and solutions

21 June 2018

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Mega2: data-handling for facilitating genetic linkage and association analyses

21 June 2018

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Haploview: analysis and visualization of LD and haplotype maps

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2670504

Haplotype reconstruction from genotype data using Imperfect Phylogeny

21 June 2018

1 reference

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Detection and integration of genotyping errors in statistical genetics

21 June 2018

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Mutations in the gene encoding epsilon-sarcoglycan cause myoclonus-dystonia syndrome

21 June 2018

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A New Statistical Method for Haplotype Reconstruction from Population Data

21 June 2018

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A major locus for myoclonus-dystonia maps to chromosome 7q in eight families

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2670504

Accuracy of haplotype frequency estimation for biallelic loci, via the expectation-maximization algorithm for unphased diploid genotype data

21 June 2018

1 reference

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Family-based tests of association and linkage that use unaffected sibs, covariates, and interactions

21 June 2018

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Transmission/disequilibrium tests for extended marker haplotypes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2670504

True pedigree errors more frequent than apparent errors for single nucleotide polymorphisms.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2670504

The early-onset torsion dystonia gene (DYT1) encodes an ATP-binding protein

21 June 2018

1 reference

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Parametric and nonparametric linkage analysis: a unified multipoint approach

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2670504

Descent graphs in pedigree analysis: applications to haplotyping, location scores, and marker-sharing statistics

21 June 2018

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Error detection for genetic data, using likelihood methods

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2670504

Faster sequential genetic linkage computations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2670504

An E-M algorithm and testing strategy for multiple-locus haplotypes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2670504

HAPLO: a program using the EM algorithm to estimate the frequencies of multi-site haplotypes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2670504

The VITESSE algorithm for rapid exact multilocus linkage analysis via genotype set-recoding and fuzzy inheritance

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2670504

Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2670504

Systematic detection of errors in genetic linkage data

21 June 2018

1 reference

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Inference of haplotypes from samples of diploid populations: complexity and algorithms

21 June 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0005280

Partition-ligation-expectation-maximization algorithm for haplotype inference with single-nucleotide polymorphisms

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0005280

Fine mapping of the Schnyder's crystalline corneal dystrophy locus

21 January 2018

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https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0005280

Avoiding recomputation in linkage analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0005280

Multipoint estimation of identity-by-descent probabilities at arbitrary positions among marker loci on general pedigrees

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0005280

Estimation of genotype error rate using samples with pedigree information--an application on the GeneChip Mapping 10K array

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0005280

Detection rates for genotyping errors in SNPs using the trio design.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0005280

The impact of genotyping error on haplotype reconstruction and frequency estimation

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19399176

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0005280

1 reference

26 July 2017

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26 July 2017

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