Genotyping errors: causes, consequences and solutions (Q36320430)

13 August 2017

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title

Genotyping errors: causes, consequences and solutions (English)

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13 August 2017

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2

Aurélie Bonin

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13 August 2017

4

Pierre Taberlet

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François Pompanon

series ordinal

1

object named as

François Pompanon

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13 August 2017

3

Eva Bellemain

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13 August 2017

1 November 2005

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13 August 2017

Nature Reviews Genetics

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13 August 2017

6

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13 August 2017

11

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13 August 2017

847-859

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https://scigraph.springernature.com/pub.10.1038/nrg1707

13 August 2017

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21 January 2018

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21 January 2018

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Identification and analysis of error types in high-throughput genotyping

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Discrepancies in dbSNP confirmation rates and allele frequency distributions from varying genotyping error rates and patterns

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The impact of genotyping error on family-based analysis of quantitative traits

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A call for mtDNA data quality control in forensic science

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The evolution of molecular markers--just a matter of fashion?

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21 January 2018

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Population size estimation in Yellowstone wolves with error-prone noninvasive microsatellite genotypes.

21 January 2018

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True pedigree errors more frequent than apparent errors for single nucleotide polymorphisms.

21 January 2018

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Detection rates for genotyping errors in SNPs using the trio design.

21 January 2018

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The effect that genotyping errors have on the robustness of common linkage-disequilibrium measures

21 January 2018

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Effects of genotyping errors, missing values and segregation distortion in molecular marker data on the construction of linkage maps

21 January 2018

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A multipoint method for detecting genotyping errors and mutations in sibling-pair linkage data

21 January 2018

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Statistical confidence for likelihood-based paternity inference in natural populations

21 January 2018

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Microsatellite null alleles in parentage analysis

21 January 2018

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An empirical exploration of data quality in DNA-based population inventories

21 January 2018

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Probability of detection of genotyping errors and mutations as inheritance inconsistencies in nuclear-family data

21 January 2018

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A transmission/disequilibrium test that allows for genotyping errors in the analysis of single-nucleotide polymorphism data

21 January 2018

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Accurate inference of relationships in sib-pair linkage studies

21 January 2018

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A transmission disequilibrium test for general pedigrees that is robust to the presence of random genotyping errors and any number of untyped parents.

21 January 2018

1 reference

Apparent heterozygote deficiencies observed in DNA typing data and their implications in forensic applications

21 January 2018

1 reference

Detection of genotyping errors by Hardy-Weinberg equilibrium testing.

21 January 2018

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Statistical and genetic aspects of quality control for DNA identification

21 January 2018

1 reference

Testing for association with a case-parents design in the presence of genotyping errors

21 January 2018

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What SNP genotyping errors are most costly for genetic association studies?

21 January 2018

1 reference

The impacts of errors in individual genotyping and DNA pooling on association studies.

21 January 2018

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Allowing for genotyping error in analysis of unmatched case-control studies.

21 January 2018

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Detection and integration of genotyping errors in statistical genetics

21 January 2018

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Sibship reconstruction from genetic data with typing errors

21 January 2018

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A tale of two genotypes: consistency between two high-throughput genotyping centers

21 January 2018

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Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories

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Detecting dinosaur DNA

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21 January 2018

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Computational analysis of microarray data

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Systematic management and analysis of yeast gene expression data

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Quantifying genotyping errors in noninvasive population genetics.

21 January 2018

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Microsatellite analysis of genetic variation in black bear populations

21 January 2018

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Nuclear DNA microsatellite analysis of genetic diversity and gene flow in the Scandinavian brown bear (Ursus arctos)

21 January 2018

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Data from amplified fragment length polymorphism (AFLP) markers show indication of size homoplasy and of a relationship between degree of homoplasy and fragment size

21 January 2018

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Instability and decay of the primary structure of DNA

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Facts from feces revisited

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Inclusion of polyvinylpyrrolidone in the polymerase chain reaction reverses the inhibitory effects of polyphenolic contamination of RNA.

21 January 2018

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Taq DNA polymerase slippage mutation rates measured by PCR and quasi-likelihood analysis: (CA/GT)n and (A/T)n microsatellites

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Specificity of substrate recognition by the EcoRI restriction endonuclease

21 January 2018

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Comparative allele sizing can produce inaccurate allele size differences for microsatellites

21 January 2018

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Noninvasive paternity assignment in Gombe chimpanzees

21 January 2018

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Parallel genotyping of over 10,000 SNPs using a one-primer assay on a high-density oligonucleotide array

21 January 2018

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Detecting low‐quality markers using map expanders

21 January 2018

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Power and sample size calculations for case-control genetic association tests when errors are present: application to single nucleotide polymorphisms

21 January 2018

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Statistical tests for detection of misspecified relationships by use of genome-screen data

21 January 2018

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PedCheck: a program for identification of genotype incompatibilities in linkage analysis

21 January 2018

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R/qtl: QTL mapping in experimental crosses

21 January 2018

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Microsatellite genotyping errors: detection approaches, common sources and consequences for paternal exclusion

21 January 2018

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Nonamplifying alleles at microsatellite loci: a caution for parentage and population studies

21 January 2018

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Noninvasive genetic sampling: look before you leap

21 January 2018

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The power and promise of population genomics: from genotyping to genome typing

21 January 2018

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Subtle population structuring within a highly vagile marine invertebrate, the veined squidLoligo forbesi, demonstrated with microsatellite DNA markers

21 January 2018

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The molecular basis and evolutionary history of a microsatellite null allele in bears

21 January 2018

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Modulation of non-templated nucleotide addition by Taq DNA polymerase: primer modifications that facilitate genotyping

31 March 2020

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Substrate nucleotide-determined non-templated addition of adenine by Taq DNA polymerase: implications for PCR-based genotyping and cloning

31 March 2020

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Methods for precise sizing, automated binning of alleles, and reduction of error rates in large-scale genotyping using fluorescently labeled dinucleotide markers. FUSION (Finland-U.S. Investigation of NIDDM Genetics) Study Group

31 March 2020

1 reference

The impact of genotyping error on haplotype reconstruction and frequency estimation

31 March 2020

1 reference

The effects of genotyping errors and interference on estimation of genetic distance

31 March 2020

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An improved protocol for the production of AFLP markers in complex genomes by means of capillary electrophoresis

31 March 2020

1 reference

The changing face of epidemiology in the genomics era

31 March 2020

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Microsatellite analysis of population structure in Canadian polar bears

31 March 2020

1 reference

Positive results in association studies are associated with departure from Hardy-Weinberg equilibrium: hint for genotyping error?

31 March 2020

1 reference

Increasing power for tests of genetic association in the presence of phenotype and/or genotype error by use of double-sampling

31 March 2020

1 reference

Evaluation of CFTR gene mutation testing methods in 136 diagnostic laboratories: report of a large European external quality assessment

31 March 2020

1 reference

Counting methods in genetical statistics

31 March 2020

1 reference

PARENTE: computer program for parentage analysis

31 March 2020

1 reference

Short allele dominance as a source of heterozygote deficiency at microsatellite loci: experimental evidence at the dinucleotide locus Gv1CT in Gracilaria gracilis (Rhodophyta)

31 March 2020

1 reference

Urine collected in the field as a source of DNA for species and individual identification

31 March 2020

1 reference

Experimental limits of PCR analysis of (CA)n repeat alterations

31 March 2020

1 reference

Laboratory temperature variation is a previously unrecognized source of genotyping error during capillary electrophoresis

31 March 2020

1 reference

micro-checker: software for identifying and correcting genotyping errors in microsatellite data

31 March 2020

1 reference

dropout: a program to identify problem loci and samples for noninvasive genetic samples in a capture-mark-recapture framework

31 March 2020

1 reference

Power loss for multiallelic transmission/disequilibrium test when errors introduced: GAW11 simulated data

31 March 2020

1 reference

inferred from DOI database lookup

7 January 2021

based on heuristic

Preferential PCR amplification of alleles: mechanisms and solutions

1 reference

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NRG1707

1 reference

13 August 2017

1 reference

PubMed ID

16304600