Integrated assessment of genomic correlates of protein evolutionary rate (Q33466747)

27 July 2017

Integrated assessment of genomic correlates of protein evolutionary rate (English)

1 reference

27 July 2017

Yu Xia

1

0 references

Mark Bender Gerstein

series ordinal

3

object named as

Mark B Gerstein

1 reference

27 July 2017

2

Eric A Franzosa

1 reference

27 July 2017

12 June 2009

1 reference

PLOS Computational Biology

27 July 2017

1 reference

27 July 2017

5

1 reference

27 July 2017

e1000413

1 reference

27 July 2017

6

1 reference

Creative Commons Attribution 4.0 International

27 July 2017

start time

12 June 2009

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Predicted functional RNAs within coding regions constrain evolutionary rates of yeast proteins

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Natural history and evolutionary principles of gene duplication in fungi.

21 June 2018

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Proportion of solvent-exposed amino acids in a protein and rate of protein evolution.

21 June 2018

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A genome-wide survey of changes in protein evolutionary rates across four closely related species of Saccharomyces sensu stricto group

21 June 2018

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Structural determinants of the rate of protein evolution in yeast.

21 June 2018

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An integrated view of protein evolution

21 June 2018

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BioGRID: a general repository for interaction datasets

21 June 2018

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Why highly expressed proteins evolve slowly

21 June 2018

1 reference

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Assessing the limits of genomic data integration for predicting protein networks

21 June 2018

1 reference

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Functional genomic analysis of the rates of protein evolution

21 June 2018

1 reference

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Information assessment on predicting protein-protein interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

Duplicated genes evolve slower than singletons despite the initial rate increase

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

Genomic analysis of essentiality within protein networks

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

The DISOPRED server for the prediction of protein disorder

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

21 June 2018

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Génolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts

21 June 2018

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Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in protein-protein interactions data sets

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

Asymmetric sequence divergence of duplicate genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

Different evolutionary patterns between young duplicate genes in the human genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

Evolutionary rate in the protein interaction network

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

Selection in the evolution of gene duplications

21 June 2018

1 reference

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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

The evolutionary fate and consequences of duplicate genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

Gene ontology: tool for the unification of biology

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

SGD: Saccharomyces Genome Database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

Comparable rates of gene loss and functional divergence after genome duplications early in vertebrate evolution

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

PAML: a program package for phylogenetic analysis by maximum likelihood

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

Amino acid composition and the evolutionary rates of protein-coding genes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

The relation between the divergence of sequence and structure in proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

The rapid generation of mutation data matrices from protein sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

Protein dispensability and rate of evolution

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000413

The quest for the universals of protein evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000413

An analysis of determinants of amino acids substitution rates in bacterial proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000413

Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000413

A single determinant dominates the rate of yeast protein evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000413

Evolutionary rate heterogeneity in proteins with long disordered regions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000413

Integrated prediction of the helical membrane protein interactome in yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000413

Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000413

Predicting essential genes in fungal genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000413

Adjusting for selection on synonymous sites in estimates of evolutionary distance

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000413

Highly expressed genes in yeast evolve slowly.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2688033

Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage

31 October 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PCBI.1000413

Selective constraints, amino acid composition, and the rate of protein evolution

21 January 2018

1 reference

12 December 2020

The yeast protein interaction network evolves rapidly and contains few redundant duplicate genes

1 reference

12 December 2020

Understanding relationship between sequence and functional evolution in yeast proteins

1 reference

12 December 2020

The causes of protein evolutionary rate variation

1 reference

12 December 2020

Assessing the determinants of evolutionary rates in the presence of noise

1 reference

12 December 2020

10.1371/JOURNAL.PCBI.1000413

Identifiers

DOI

1 reference

27 July 2017

journals/ploscb/XiaFG09

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

27 July 2017

1 reference

PubMed ID

19521505