A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins (Q33521763)

27 July 2017

title

A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins (English)

1 reference

27 July 2017

main subject

computational biology

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5

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27 July 2017

Daniel Lundin

3

0 references

Jens Lagergren

7

object named as

Jens Lagergren

1 reference

27 July 2017

Mats Ensterö

1

1 reference

27 July 2017

Orjan Akerborg

2

1 reference

27 July 2017

Bei Wang

4

1 reference

27 July 2017

Marie Ohman

6

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27 July 2017

publication date

4 January 2010

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27 July 2017

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27 July 2017

volume

11

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27 July 2017

page(s)

6

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Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencing

27 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

Large-scale mRNA sequencing determines global regulation of RNA editing during brain development.

21 June 2018

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Screening of human SNP database identifies recoding sites of A-to-I RNA editing

21 June 2018

1 reference

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Replication of association between ELAVL4 and Parkinson disease: the GenePD study

21 June 2018

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Diverse molecular functions of Hu proteins

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

Regulation of neuron-specific alternative splicing of neurofibromatosis type 1 pre-mRNA.

21 June 2018

1 reference

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Neuronal regulation of alternative pre-mRNA splicing

21 June 2018

1 reference

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A method for finding sites of selective adenosine deamination

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

Editing modifies the GABA(A) receptor subunit alpha3

21 June 2018

1 reference

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Notch3 and the Notch3-upregulated RNA-binding protein HuD regulate Ikaros alternative splicing

21 June 2018

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21 June 2018

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A nuclear function of Hu proteins as neuron-specific alternative RNA processing regulators

21 June 2018

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21 June 2018

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RNA editing level in the mouse is determined by the genomic repeat repertoire

21 June 2018

1 reference

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Breaking the central dogma by RNA editing

21 June 2018

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A method to find tissue-specific novel sites of selective adenosine deamination

21 June 2018

1 reference

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Regulating gene expression through RNA nuclear retention

21 June 2018

1 reference

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Identification of RNA editing sites in the SNP database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

A bioinformatic screen for novel A-I RNA editing sites reveals recoding editing in BC10.

21 June 2018

1 reference

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The double-stranded-RNA-binding motif: interference and much more

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

A survey of RNA editing in human brain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

Systematic identification of abundant A-to-I editing sites in the human transcriptome

21 June 2018

1 reference

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Identification and characterization of multi-species conserved sequences

21 June 2018

1 reference

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Liver Disintegration in the Mouse Embryo Caused by Deficiency in the RNA-editing Enzyme ADAR1

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

Recognition of double-stranded RNA by proteins and small molecules

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

Nervous system targets of RNA editing identified by comparative genomics

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

Human-mouse alignments with BLASTZ

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

The UCSC Genome Browser Database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

RNA editing by adenosine deaminases that act on RNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

BLAT—The BLAST-Like Alignment Tool

21 June 2018

1 reference

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21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

Requirement of the RNA editing deaminase ADAR1 gene for embryonic erythropoiesis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

A-to-I pre-mRNA editing in Drosophila is primarily involved in adult nervous system function and integrity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

A phylogenetic analysis reveals an unusual sequence conservation within introns involved in RNA editing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

Long RNA hairpins that contain inosine are present in Caenorhabditis elegans poly(A)+ RNA

21 June 2018

1 reference

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DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

dbEST--database for "expressed sequence tags"

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

Sequence logos: a new way to display consensus sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

TEXshade: shading and labeling of multiple sequence alignments using LATEX2 epsilon.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831006

The importance of internal loops within RNA substrates of ADAR1

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20047656

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

1 reference

https://pubmed.ncbi.nlm.nih.gov/20047656

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Double-stranded RNA adenosine deaminases ADAR1 and ADAR2 have overlapping specificities

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20047656

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-11-6

1 reference

journals/bmcbi/EnsteroALWFOL10

27 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

27 July 2017

1 reference