The double-stranded-RNA-binding motif: interference and much more (Q35968493)

11 August 2017

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title

The double-stranded-RNA-binding motif: interference and much more (English)

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11 August 2017

Bin Tian

1

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author name string

Philip C Bevilacqua

series ordinal

2

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11 August 2017

Amy Diegelman-Parente

series ordinal

3

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11 August 2017

Michael B Mathews

series ordinal

4

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11 August 2017

language of work or name

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1 December 2004

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Nature Reviews Molecular Cell Biology

11 August 2017

published in

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11 August 2017

volume

5

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11 August 2017

issue

12

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11 August 2017

page(s)

1013-1023

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The non-Watson-Crick base pairs and their associated isostericity matrices

11 August 2017

cites work

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RNA-protein interactions

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Mechanism of interferon action: identification of a RNA binding domain within the N-terminal region of the human RNA-dependent P1/eIF-2 alpha protein kinase

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RNA recognition by a Staufen double-stranded RNA-binding domain

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Structure of the double-stranded RNA-binding domain of the protein kinase PKR reveals the molecular basis of its dsRNA-mediated activation

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Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III.

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Molecular basis of double-stranded RNA-protein interactions: structure of a dsRNA-binding domain complexed with dsRNA.

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Noncatalytic assembly of ribonuclease III with double-stranded RNA.

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Interactions between double-stranded RNA regulators and the protein kinase DAI

21 January 2018

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Minor-groove recognition of double-stranded RNA by the double-stranded RNA-binding domain from the RNA-activated protein kinase PKR.

21 January 2018

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dsRBM1 and a proline-rich domain of RNA helicase A can form a composite binder to recognize a specific dsDNA

21 January 2018

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Induced fit in RNA-protein recognition

21 January 2018

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Current topics in RNA-protein recognition: control of specificity and biological function through induced fit and conformational capture

21 January 2018

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Water and ion binding around r(UpA)12 and d(TpA)12 oligomers--comparison with RNA and DNA (CpG)12 duplexes.

21 January 2018

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Binding of the protein kinase PKR to RNAs with secondary structure defects: role of the tandem A-G mismatch and noncontiguous helixes

21 January 2018

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The binding site of the RNA-dependent protein kinase (PKR) on EBER1 RNA from Epstein-Barr virus

21 January 2018

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Expanded CUG repeat RNAs form hairpins that activate the double-stranded RNA-dependent protein kinase PKR

21 January 2018

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Human interferon-gamma mRNA autoregulates its translation through a pseudoknot that activates the interferon-inducible protein kinase PKR

21 January 2018

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Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans

21 January 2018

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A role for the RNase III enzyme DCR-1 in RNA interference and germ line development in Caenorhabditis elegans

21 January 2018

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MicroRNA maturation: stepwise processing and subcellular localization

21 January 2018

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Straightening of bulged RNA by the double-stranded RNA-binding domain from the protein kinase PKR.

21 January 2018

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Identification of novel genes coding for small expressed RNAs

21 January 2018

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An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans

21 January 2018

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An extensive class of small RNAs in Caenorhabditis elegans

21 January 2018

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RNA structure-dependent uncoupling of substrate recognition and cleavage by Escherichia coli ribonuclease III.

21 January 2018

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Regulation of ribonuclease III processing by double-helical sequence antideterminants

21 January 2018

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Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2

21 January 2018

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Staufen protein associates with the 3'UTR of bicoid mRNA to form particles that move in a microtubule-dependent manner.

21 January 2018

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Substrate recognition by a eukaryotic RNase III: the double-stranded RNA-binding domain of Rnt1p selectively binds RNA containing a 5'-AGNN-3' tetraloop

21 January 2018

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Essential role for the dsRNA-dependent protein kinase PKR in innate immunity to viral infection

21 January 2018

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RNA silencing: the genome's immune system

21 January 2018

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Ancient pathways programmed by small RNAs

21 January 2018

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Evaluation of the RNA determinants for bacterial and yeast RNase III binding and cleavage.

21 January 2018

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The dsRNA binding protein family: critical roles, diverse cellular functions

21 January 2018

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RNase III enzymes and the initiation of gene silencing

21 January 2018

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Intrinsic double-stranded-RNA processing activity of Escherichia coli ribonuclease III lacking the dsRNA-binding domain

21 January 2018

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Isolation of a U-insertion/deletion editing complex from Leishmania tarentolae mitochondria

21 January 2018

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Functional characterization of and cooperation between the double-stranded RNA-binding motifs of the protein kinase PKR.

21 January 2018

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PACT, a protein activator of the interferon-induced protein kinase, PKR.

21 January 2018

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Modular structure of PACT: distinct domains for binding and activating PKR

21 January 2018

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Distinct roles of two conserved Staufen domains in oskar mRNA localization and translation

21 January 2018

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Thirty-three years later, a glimpse at the ribonuclease III active site.

21 January 2018

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Role for a bidentate ribonuclease in the initiation step of RNA interference

21 January 2018

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A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA

21 January 2018

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A novel type of RNase III family proteins in eukaryotes

21 January 2018

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The nuclear RNase III Drosha initiates microRNA processing

21 January 2018

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R2D2, a Bridge Between the Initiation and Effector Steps of the Drosophila RNAi Pathway

21 January 2018

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The dsRNA binding protein RDE-4 interacts with RDE-1, DCR-1, and a DExH-box helicase to direct RNAi in C. elegans

21 January 2018

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Antiviral actions of interferons

21 January 2018

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Adenosine deaminases acting on RNA (ADARs): RNA-editing enzymes

21 January 2018

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Systematic identification of abundant A-to-I editing sites in the human transcriptome

21 January 2018

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Selective stimulation of translational expression by Alu RNA.

21 January 2018

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Induction and suppression of RNA silencing by an animal virus

21 January 2018

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RNA silencing of dengue virus type 2 replication in transformed C6/36 mosquito cells transcribing an inverted-repeat RNA derived from the virus genome

21 January 2018

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Specificity of short interfering RNA determined through gene expression signatures

21 January 2018

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Genomewide view of gene silencing by small interfering RNAs

21 January 2018

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Activation of the interferon system by short-interfering RNAs

21 January 2018

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Nonspecific, concentration-dependent stimulation and repression of mammalian gene expression by small interfering RNAs (siRNAs).

21 January 2018

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Evidence that vaccinia virulence factor E3L binds to Z-DNA in vivo: Implications for development of a therapy for poxvirus infection

21 January 2018

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Mutations in RNAi rescue aberrant chemotaxis of ADAR mutants

21 January 2018

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RNAi is antagonized by A-->I hyper-editing

21 January 2018

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The RNA binding protein nuclear factor 90 functions as both a positive and negative regulator of gene expression in mammalian cells

21 January 2018

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Transcription repression of human hepatitis B virus genes by negative regulatory element-binding protein/SON

21 January 2018

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Constitutive silencing of IFN-beta promoter is mediated by NRF (NF-kappaB-repressing factor), a nuclear inhibitor of NF-kappaB

21 January 2018

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RNA helicase A interacts with dsDNA and topoisomerase IIalpha

21 January 2018

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staufen, a gene required to localize maternal RNAs in the Drosophila egg

21 January 2018

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The staufen/pumilio pathway is involved in Drosophila long-term memory.

21 January 2018

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Isolation and characterization of Staufen-containing ribonucleoprotein particles from rat brain

21 January 2018

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Dynamic association of RNA-editing enzymes with the nucleolus

21 January 2018

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Modulation of RNA editing by functional nucleolar sequestration of ADAR2

21 January 2018

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Purification and activation of the double-stranded RNA-dependent eIF-2 kinase DAI

21 January 2018

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Activities of adenovirus virus-associated RNAs: purification and characterization of RNA binding proteins

21 January 2018

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Xlrbpa, a double-stranded RNA-binding protein associated with ribosomes and heterogeneous nuclear RNPs

21 January 2018

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The human but not the Xenopus RNA-editing enzyme ADAR1 has an atypical nuclear localization signal and displays the characteristics of a shuttling protein

21 January 2018

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Nuclear export of NF90 is required for interleukin-2 mRNA stabilization

21 January 2018

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CRM1 mediates the export of ADAR1 through a nuclear export signal within the Z-DNA binding domain

21 January 2018

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Subcellular distribution of ADAR1 isoforms is synergistically determined by three nuclear discrimination signals and a regulatory motif

21 January 2018

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Exportin-5, a novel karyopherin, mediates nuclear export of double-stranded RNA binding proteins

21 January 2018

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Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs

21 January 2018

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Nuclear export of microRNA precursors

21 January 2018

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Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs

21 January 2018

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Exp5 exports eEF1A via tRNA from nuclei and synergizes with other transport pathways to confine translation to the cytoplasm

21 January 2018

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The brain-specific double-stranded RNA-binding protein Staufen2: nucleolar accumulation and isoform-specific exportin-5-dependent export

21 January 2018

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The double-stranded RNA-binding protein X1rbpa promotes RNA strand annealing.

21 January 2018

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Phosphorylation of the RNA-dependent protein kinase regulates its RNA-binding activity

21 January 2018

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A structural basis for recognition of A.T and T.A base pairs in the minor groove of B-DNA

21 January 2018

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Hydrogen bonding, base stacking, and steric effects in dna replication

21 January 2018

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21 January 2018

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Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans

21 January 2018

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RNA interference in protozoan parasites

21 January 2018

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MicroRNAs: genomics, biogenesis, mechanism, and function

21 January 2018

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Thermodynamics of base pairing

21 January 2018

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Hierarchy and dynamics of RNA folding

21 January 2018

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21 January 2018

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HMM Logos for visualization of protein families

21 January 2018

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Induction of an interferon response by RNAi vectors in mammalian cells

21 January 2018

1 reference

21 January 2018

Protein-RNA recognition

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Conserved structures and diversity of functions of RNA-binding proteins

31 March 2020

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31 March 2020

RNA-protein complexes

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A conserved double-stranded RNA-binding domain

31 March 2020

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Structure of the dsRNA binding domain of E. coli RNase III.

31 March 2020

1 reference

NMR solution structure of a dsRNA binding domain from Drosophila staufen protein reveals homology to the N-terminal domain of ribosomal protein S5

31 March 2020

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Persistence length of RNA

31 March 2020

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Translational control by the Epstein-Barr virus small RNA EBER-1. Reversal of the double-stranded RNA-induced inhibition of protein synthesis in reticulocyte lysates

31 March 2020

1 reference

Molecular dynamics simulation of the RNA complex of a double-stranded RNA-binding domain reveals dynamic features of the intermolecular interface and its hydration

31 March 2020

1 reference

Phylogenetics and functions of the double-stranded RNA-binding motif: a genomic survey.

31 March 2020

1 reference

Function, mechanism and regulation of bacterial ribonucleases

31 March 2020

1 reference

The Minimal Gene Complement of Mycoplasma genitalium

31 March 2020

1 reference

Major groove accessibility of RNA

31 March 2020

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Sequence-specific recognition of double helical nucleic acids by proteins

31 March 2020

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Signal integration via PKR.

31 March 2020

1 reference

inferred from DOI database lookup

7 January 2021

based on heuristic

The E3L and K3L vaccinia virus gene products stimulate translation through inhibition of the double-stranded RNA-dependent protein kinase by different mechanisms

1 reference

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NRM1528

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Dimensions Publication ID

11 August 2017

1024180800

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