Computational identification of rare codons of Escherichia coli based on codon pairs preference (Q33527112)

27 July 2017

title

Computational identification of rare codons of Escherichia coli based on codon pairs preference (English)

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27 July 2017

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Xianming Wu

1

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27 July 2017

Songfeng Wu

2

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27 July 2017

Dong Li

3

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27 July 2017

Jiyang Zhang

4

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27 July 2017

Lin Hou

5

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27 July 2017

Jie Ma

6

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27 July 2017

Wanlin Liu

7

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27 July 2017

Daming Ren

8

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27 July 2017

Yunping Zhu

9

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27 July 2017

Fuchu He

10

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27 July 2017

publication date

28 January 2010

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27 July 2017

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27 July 2017

volume

11

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27 July 2017

page(s)

61

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Genome evolution and the emergence of fruiting body development in Myxococcus xanthus

27 July 2017

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Codon bias at the 3'-side of the initiation codon is correlated with translation initiation efficiency in Escherichia coli

21 June 2018

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tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes

21 June 2018

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Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cervisiae and Escherichia coli

21 June 2018

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The relationship between synonymous codon usage and protein structure

21 June 2018

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21 June 2018

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Synonymous codon bias is related to gene length in Escherichia coli: selection for translational accuracy?

21 June 2018

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Increased ribosomal accuracy increases a programmed translational frameshift in Escherichia coli

21 June 2018

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21 June 2018

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21 June 2018

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Consecutive low-usage leucine codons block translation only when near the 5' end of a message in Escherichia coli.

21 June 2018

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21 June 2018

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Importance of codon preference for production of human RAP74 and reconstitution of the RAP30/74 complex.

21 June 2018

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21 June 2018

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21 June 2018

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Codon pair utilization biases influence translational elongation step times

21 June 2018

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21 June 2018

Codon selection in yeast

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Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system

21 June 2018

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21 June 2018

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Sense codons are found in specific contexts.

21 June 2018

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The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

21 June 2018

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The E. coli dnaY gene encodes an arginine transfer RNA.

21 June 2018

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Translation of the sequence AGG-AGG yields 50% ribosomal frameshift

21 June 2018

1 reference

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Nonrandom utilization of codon pairs in Escherichia coli

21 June 2018

1 reference

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Codon usage in plant genes

21 June 2018

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High-level expression of recombinant genes in Escherichia coli is dependent on the availability of the dnaY gene product

21 June 2018

1 reference

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Codon contexts from weakly expressed genes reduce expression in vivo.

21 June 2018

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Differential mRNA stability controls relative gene expression within a polycistronic operon

21 June 2018

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21 June 2018

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Frameshift suppression at tandem AGA and AGG codons by cloned tRNA genes: assigning a codon to argU tRNA and T4 tRNA(Arg).

21 June 2018

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Identification and comparison of stable and unstable mRNAs in Saccharomyces cerevisiae

21 June 2018

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Codon usage and secondary structure of mRNA.

21 June 2018

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Novel in-frame two codon translational hop during synthesis of bovine placental lactogen in a recombinant strain of Escherichia coli

21 June 2018

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On the origin of synonymous codon usage divergence between thermophilic and mesophilic prokaryotes

21 June 2018

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Patterns of mutation and selection at synonymous sites in Drosophila.

31 October 2018

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Cytosine deamination and selection of CpG suppressed clones are the two major independent biological forces that shape codon usage bias in coronaviruses.

31 October 2018

1 reference

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Expression and purification of ancrod, an anticoagulant drug, in Pichia pastoris.

31 October 2018

1 reference

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Codon bias as a factor in regulating expression via translation rate in the human genome.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828438

Drosophila gene tazman, an orthologue of the yeast exosome component Rrp44p/Dis3, is differentially expressed during development.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828438

Codon pairs in the genome of Escherichia coli

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828438

Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828438

Control of mRNA stability and translation during Drosophila development

31 October 2018

1 reference

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Mass spectrometric analysis of human soluble catechol O-methyltransferase expressed in Escherichia coli. Identification of a product of ribosomal frameshifting and of reactive cysteines involved in S-adenosyl-L-methionine binding

31 October 2018

1 reference

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Compositional heterogeneity of the Escherichia coli genome: a role for VSP repair?

31 October 2018

1 reference

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An estimation of minimal genome size required for life

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2828438

Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting tran

31 October 2018

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12 December 2020

No Evidence for Tissue-Specific Adaptation of Synonymous Codon Usage in Humans

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12 December 2020

Codon usage determines translation rate in Escherichia coli

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12 December 2020

Codon usage tabulated from the GenBank genetic sequence data

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12 December 2020

Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins

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12 December 2020

Identifiers

DOI

10.1186/1471-2105-11-61

1 reference

journals/bmcbi/WuWLZHMLRZH10

27 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

27 July 2017

1 reference