On the origin of synonymous codon usage divergence between thermophilic and mesophilic prokaryotes (Q43023721)

12 November 2017

title

On the origin of synonymous codon usage divergence between thermophilic and mesophilic prokaryotes (English)

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12 November 2017

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Surajit Basak

1

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12 November 2017

Sujata Roy

series ordinal

2

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12 November 2017

Tapash Chandra Ghosh

series ordinal

3

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12 November 2017

language of work or name

English

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publication date

29 November 2007

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12 November 2017

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12 November 2017

volume

581

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12 November 2017

issue

30

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12 November 2017

page(s)

5825-5830

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Codon catalog usage and the genome hypothesis

12 November 2017

cites work

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Codon catalog usage is a genome strategy modulated for gene expressivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Codon usage in bacteria: correlation with gene expressivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Gene expressivity is the main factor in dictating the codon usage variation among the genes in Pseudomonas aeruginosa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

On the origin of genomic adaptation at high temperature for prokaryotic organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Relationship between G + C in silent sites of codons and amino acid composition of human proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Hydrophobicity, expressivity and aromaticity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encoded genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Synonymous codon bias is related to gene length in Escherichia coli: selection for translational accuracy?

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Secondary structure of MS2 phage RNA and bias in code word usage

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Equal G and C contents in histone genes indicate selection pressures on mRNA secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Noise in eukaryotic gene expression

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Synonymous codon usage is subject to selection in thermophilic bacteria

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Ribosome-mediated translational pause and protein domain organization

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Protein secondary structural types are differentially coded on messenger RNA.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Consecutive low-usage leucine codons block translation only when near the 5' end of a message in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Statistical evidence for conserved, local secondary structure in the coding regions of eukaryotic mRNAs and pre-mRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Co-transcriptional folding is encoded within RNA genes

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

A comparative method for finding and folding RNA secondary structures within protein-coding regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Noncoding RNA genes identified in AT-rich hyperthermophiles

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Widespread selection for local RNA secondary structure in coding regions of bacterial genes

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Use and misuse of correspondence analysis in codon usage studies

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

mRNAs have greater negative folding free energies than shuffled or codon choice randomized sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Global mRNA stability is not associated with levels of gene expression in Drosophila melanogaster but shows a negative correlation with codon bias.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

The relationship among gene expression, folding free energy and codon usage bias in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

No evidence that mRNAs have lower folding free energies than random sequences with the same dinucleotide distribution

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Compositional changes in RNA, DNA and proteins for bacterial adaptation to higher and lower temperatures

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

The nonrandom location of synonymous codons suggests that reading frame-independent forces have patterned codon preferences

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Mammalian mutation pressure, synonymous codon choice, and mRNA degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Reinvestigating the codon and amino acid usage of S. cerevisiae genome: a new insight from protein secondary structure analysis

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

Translational selection and molecular evolution

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2007.11.054

10.1016/J.FEBSLET.2007.11.054

21 January 2018

Identifiers

DOI

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release_hfizgqjfrfdo5cq3tjv76vfbgu

12 November 2017

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/hfizgqjfrfdo5cq3tjv76vfbgu

mapped directly with Wikidata item

24 November 2022

based on heuristic

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