AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number (Q33536850)

27 July 2017

AutoSOME: a clustering method for identifying gene expression modules without prior knowledge of cluster number (English)

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27 July 2017

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27 July 2017

James B Cooper

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27 July 2017

4 March 2010

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27 July 2017

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27 July 2017

11

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27 July 2017

117

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Creative Commons Attribution 2.0 Generic

27 July 2017

start time

4 March 2010

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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April 2022 Public Data File from Crossref

describes a project that uses

Cytoscape

object named as

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-11-117

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Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells

21 June 2018

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Induced pluripotent stem cells and embryonic stem cells are distinguished by gene expression signatures

21 June 2018

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Prestige centrality-based functional outlier detection in gene expression analysis

21 June 2018

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Heterogeneity of pluripotent marker gene expression in colonies generated in human iPS cell induction culture

21 June 2018

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21 June 2018

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21 June 2018

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A roadmap of clustering algorithms: finding a match for a biomedical application

21 June 2018

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Induced pluripotent stem cells from a spinal muscular atrophy patient

21 June 2018

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Clustering cancer gene expression data: a comparative study

21 June 2018

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21 June 2018

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Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer

21 June 2018

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Regulatory networks define phenotypic classes of human stem cell lines

21 June 2018

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Reprogramming of human somatic cells to pluripotency with defined factors

21 June 2018

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Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R.

21 June 2018

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A graph-based approach to systematically reconstruct human transcriptional regulatory modules

21 June 2018

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Density-equalizing Euclidean minimum spanning trees for the detection of all disease cluster shapes

21 June 2018

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Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation.

21 June 2018

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Clustering by passing messages between data points

21 June 2018

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A meta-analysis of human embryonic stem cells transcriptome integrated into a web-based expression atlas.

21 June 2018

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A systematic comparison and evaluation of biclustering methods for gene expression data

21 June 2018

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How does gene expression clustering work?

21 June 2018

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

21 June 2018

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Core transcriptional regulatory circuitry in human embryonic stem cells

21 June 2018

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Survey of clustering algorithms

21 June 2018

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Computational cluster validation in post-genomic data analysis

21 June 2018

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PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order

21 June 2018

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Java Treeview--extensible visualization of microarray data

21 June 2018

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Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation

21 June 2018

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From The Cover: Diffusion-based method for producing density-equalizing maps

21 June 2018

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Metagenes and molecular pattern discovery using matrix factorization

21 June 2018

1 reference

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

21 June 2018

1 reference

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DAVID: Database for Annotation, Visualization, and Integrated Discovery

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2846907

Spectral biclustering of microarray data: coclustering genes and conditions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2846907

Clustering of the SOM easily reveals distinct gene expression patterns: results of a reanalysis of lymphoma study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2846907

Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2846907

Molecular classification of cancer: class discovery and class prediction by gene expression monitoring

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2846907

Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2846907

Cluster analysis and display of genome-wide expression patterns

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2846907

Automatic cluster detection in Kohonen's SOM.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2846907

Clustering of the self-organizing map.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2846907

Adaptive double self-organizing maps for clustering gene expression profiles.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2846907

31 October 2018

Identifiers

DOI

10.1186/1471-2105-11-117

1 reference

27 July 2017

journals/bmcbi/NewmanC10

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

27 July 2017

1 reference

PubMed ID

20202218